Oncorhynchus tshawytscha (Chinook salmon): 112219294
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Entry
112219294 CDS
T05605
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112219294 (tmf1)
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112219294 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
112219294
NCBI-ProteinID:
XP_024236195
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All DBs
Position
LG02:22738282..22747604
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AA seq
1171 aa
AA seq
DB search
MSWFSSTQLSSFAKQALTTAQKSIDRVLDIKEDEWGDTVVMPYDDLPGKTPLSGGWGMTQ
WDSPPEECTTTLPPSSEAITTPVTRMVVDETENFFSAFLPSGELQGVMDTQVVSVPPTKS
HRRPQEKDEEDKDDVDPHKTGLTETNRLEDQEATENQAVLTESSSLWSSSEIVLVQTPEP
PVLAQGDSPDDDSPLISESWIESTVDDTTAVSEDARTEQPFTPSETQHDYDDHISEPTVN
TELEPPFNPSPPTPPREILLEAKDPKAADRQSDTPSPKSEDRQSNTPSPPVSAFSSGTST
TSDIEVLDHESVQSESSASSRQEIAEAKAGLHLMQGSFQLLSASACGDFPRLEDYPKLTE
SCGSSSDAFERIDSFSMQSLDSRSVSEVNSDDEIPGSRTLASVTAGPTPSPPVRVATTAQ
EREVEEEEKQQEEEEDDEEGLTETMKDQSLDENEMEESGRSATPVNSEQPEDLIEQESEA
DVTLSGPTPDHEEQLPPPITEEKRGVSTCQILELQKVIDELSSRLEKRELQLLSVSKDKA
RLEEECDNLKDEVIGLKEESSSVQSLKEEFTQRIADTERKAQLACKERDIAKKEIKGMRE
ELSTRLNSNETMEIIREKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKEKESETKITKQ
NKKLKDQEEELKHLQQVLDEKEEVEKQHRDNIKKLNVVVERQEKDMTKLQSDSEELLENN
RSLQAALDNSYKELASLHKAKASHASEAQEAALSRETQAKEELALALVKAQEEARMQQDA
LVNQVADLRLALQRAEQQQARKEDYLREEISDLQQRLQGAETRNQELSQSVTSATRPLLR
QIENLQASLGGQTASWEKLEKSISDRLVEAQAQLAVAVEKERAATEELMAIKAQLASLES
QNSLLRQEKGRLHGQLDAEKTRREKLEDDSSREHVELENLRGEHTRTQEEAKKEKLLLTN
QLEMEKMKVEQEKKKCYLAQEALKEKVDLFINERKVLVHSVGEPPASSTPSLSRSSSISG
VDHAGLHSSFSQEDSLGHSLGTMTMSMSGTNLYEAARLSGGSSIIENLQSQLKLREGEIA
QLQLEIASLERTRSSMAEEMVRLTNQNEEMEDSVKEIPTLKVQLQELEQRHNTILQMYGE
KAEEAEELRLDLEDVKNMFKTQIDELLKNQK
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcagttctacccaactgtcaagctttgccaaacaagctttgacaacagct
cagaagtccatcgaccgagtactggacattaaagaagacgaatggggtgacacagtggta
atgccttatgacgatctaccagggaagactccattgagcggtggatgggggatgacacaa
tgggactctcccccggaggaatgcaccacaactctccccccatcatctgaggccatcacg
acccctgtcacccgcatggttgtggatgaaacagagaacttcttcagtgcttttctgccc
tcaggagagctccagggtgtcatggacactcaggtagtctctgtgccgcccaccaagtcc
cacaggcggccacaggagaaggatgaggaggacaaggacgatgtggaccctcacaagaca
ggcctgacagagaccaacagactggaagaccaggaagctactgagaaccaggctgtcctg
actgagtcctcaagtctatggtcttcctctgaaattgttctcgttcagacaccagagcct
ccagtcctggctcagggtgattctcctgatgatgacagtccactaatcagtgagagctgg
atagaatcaactgtggatgatacaactgctgtttctgaggatgcacgaaccgaacaacca
tttactccctcagaaacccaacatgattatgatgatcacatctctgaacccaccgtcaac
actgaactagagccccccttcaatccatctcctcccacaccccctagggaaatcttattg
gaggccaaagaccccaaagcggcggacaggcagagtgacacaccctcccctaaatcggag
gacagacagagcaacaccccctcccctcctgtcagcgccttctcctcaggcacctccacc
accagtgatattgaggttttggaccatgagagtgtacagagtgagagttcagccagttcc
aggcaggagatagcagaggccaaagcaggcctccacctgatgcagggctccttccagctt
ctctcagcctctgcctgtggggacttcccccgcttagaggactaccccaagctgaccgag
agctgtggatcctcctcagatgcctttgagcgcatcgactcgttcagcatgcagtccctg
gacagccgcagtgtcagcgaagtcaattctgatgatgagatcccagggagccggacactg
gcatctgtcaccgcagggcccacgccttctccgcctgtcagagtggcaaccactgcacag
gaacgggaagtagaagaggaggagaagcagcaggaggaggaagaagatgatgaagagggg
ctaacagaaacaatgaaggatcagtctctggatgagaatgagatggaggagagtggtcgc
agtgccacacctgttaacagcgagcagcctgaggacctaatagaacaggaatcagaggcg
gacgtcacgctgtcaggtcccacccctgaccatgaggaacagttgcctccaccaataacg
gaagagaaaagaggggtgtcaacatgtcagattctggagcttcaaaaggtaattgatgag
ctgtcaagccgccttgagaagagggagttacagctgctgtcagtcagcaaagacaaagcc
aggctggaggaggagtgtgacaaccttaaagatgaggtgataggtcttaaggaggagagt
tccagtgtgcagtctctgaaggaggagttcacccagcgcatcgcagacacagagaggaaa
gcccagctagcgtgcaaggagagggatatagccaagaaggagataaaggggatgagggaa
gagctgtccaccagactgaactccaacgagactatggagatcatcagagagaaggaggaa
cagatccgcgaactgctggaggagggtgagaagctgtccaagcagcagctgcagcactcc
aacatcatcaagaagctgcgtgtgaaggagaaggagagtgagaccaaaatcaccaaacag
aacaagaagctgaaagatcaggaggaagagctcaaacacctacagcaggttctggatgag
aaggaggaagtggagaagcagcacagggacaacattaagaagctgaacgtggtggtggag
cgccaggagaaggacatgaccaaactccagagtgactcagaggagctcctggaaaacaac
aggagcctgcaggctgccctcgacaactcctacaaggaactggcttcactgcacaaagcc
aaggcaagccatgccagcgaggcccaggaggctgctttgagcagggaaacccaggccaag
gaggagctggctctggccctggtgaaggcccaggaggaggcccgcatgcagcaggatgct
ctggtcaaccaggtggctgatctgcggctggctctgcagagggctgaacagcagcaggcc
aggaaagaagactacctgagggaggagatcagtgacctgcagcagagactgcagggggcg
gagaccaggaaccaagaactgagtcagagtgttacctctgcaacgcggccgctgctcaga
cagatcgagaacctgcaggcctcgctggggggccagacggcatcatgggagaaactggag
aagagcatctcagatcgactagtggaagcacaggcccagctggctgttgctgtggaaaag
gagcgtgcagcaactgaggagctgatggctattaaggcccagctggcctcactggagtcc
cagaattccctgcttcgacaagagaaagggcgtctccacggtcagctggacgcagagaag
accaggcgggagaaactggaggatgacagcagcagggagcatgtggagctggagaatctg
aggggagagcacactcgaacacaggaggaggccaagaaggagaagctcctcctgaccaat
cagctggagatggagaaaatgaaggtggagcaagagaagaagaaatgctacctagcacaa
gaggccctgaaggaaaaggtagatctatttatcaatgagcggaaggtattggttcactct
gtgggtgagcccccagcctcatccaccccctccctgtcccgttccagctccatcagtggg
gtagaccacgccggcctgcactcctccttctcccaggaggactctctgggtcactcattg
gggacgatgacgatgtctatgagtgggaccaacctgtatgaggcggctcggctcagtgga
ggctccagcatcatagagaacctgcaatcccagctcaaactccgagagggagagatagca
cagctacagctggagatcgctagtctggagaggactcgctcgtccatggcggaggagatg
gtcagattgaccaatcagaatgaggagatggaggacagtgtgaaggagatccccacactg
aaagtacaacttcaggagctggagcagagacacaacaccatcctccagatgtatggagag
aaggctgaggaggcagaggagctgagactcgacctggaggacgtcaagaacatgttcaaa
acccagattgacgaactgctcaagaaccagaagtag
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integrated database retrieval system
