Oncorhynchus tshawytscha (Chinook salmon): 112219341
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Entry
112219341 CDS
T05605
Name
(RefSeq) scm-like with four MBT domains protein 1 isoform X1
KO
K26269
scm-like with four MBT domains protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112219341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112219341
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
PRC1.4 specific proteins
112219341
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GFIT
Motif
Pfam:
MBT
SLED
SAM_2
SAM_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
112219341
NCBI-ProteinID:
XP_024236276
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Position
LG02:complement(22556288..22570461)
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AA seq
865 aa
AA seq
DB search
MSHELLESDGDSSLDVSDFNWDDYLEENGAVSVPHHAFKHVDQGLQTGLTPGMKLEVCVR
SETDQPYWVASIITTCGQLLLLRYEGYHDDRRADFWCDIMTADLHPLGWSREQSKPMRPP
EGVREKQPDWEGVLEKALAEKCSAPANLLEGPQRGKDPVDLMSPGCSVELQDSVDPGVAW
GAEVEENMGGRLRLRLAGTERLPDTHATLWLYYLHPRLHPPGWAKEHGCTLRPPSALVPL
HTEEEWEEIRQRISNQPHDEALSEEFYKDRPAIAAHCFTEGMKLEAVDPTSPFCISPATV
IKVFSDECFLVKMDSLRGDDSGAEGVGSFLCHRDSPGIFPAQWSLKNGLPLSPPPGYQGQ
DFDWADYLKQCQAEAAPQHCFPTEQSDHSFKEAMKLEAVNPISPEHIHVATVTKVKGQHI
WLGLEGLKQAIPELIAHVDSLDIFPVSWCETNGYPLLYPIKPKVEKQRRIAVVQPEKHRA
PPKSTTPDTLRLQLASQSETGQGNGKYCCPKIFFNHRCFSGPYLNKGRIAELPQCVGPGN
CVLVLKEVLTLLINSAYKPSRVLRELQLDQEDRWHGHGETLKAKYKGKSYRATVEIVRTA
DCVAEFCRKTCIKLECCPNLFGPRMVLERCSENCSVLTKTKYTYYYGKKKCKRVGRPPGG
HSNLEGGVKRRGRRRKRRKQLFVHKKRRSSASLDNTPAGSPQGSGDEEDLDDENSLSDDT
GSELQDDQDDSEYSIGKSQPPTPSPSPPATPRPTRKRRKPRSPSYSDDENHPPSPKSLRG
EAPQKLCLDTSPLEWSVTDVVCFIRTTDCAPLARIFLDQEIDGQALLLLNLPTLQECMDL
KLGPAIKLCHHIERVKLEFYQKFAT
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgagttgctggagtccgatggagactctagtctggatgtgtctgactttaac
tgggatgactatttggaggagaacggggcagtgtctgtgccccaccatgccttcaaacac
gtggaccagggcttgcagacaggtctgactccaggtatgaagctggaggtgtgtgtgcgt
tcagagaccgaccaaccctactgggtggcctccatcatcaccacctgtggccagctgctc
ctcctgcgatacgaaggttaccatgacgaccgccgcgccgacttctggtgtgacattatg
acggctgacctccaccccctgggctggagccgggagcagagcaaacccatgagacccccc
gagggtgtgagagagaagcaaccagactgggagggtgtcctggagaaagccctagctgag
aagtgcagtgcacctgccaacctgctggaagggccccagcgtggtaaggacccagtggac
ctgatgtctccaggctgcagtgtggagctgcaggacagtgttgaccctggggtggcgtgg
ggcgctgaggtggaggagaacatgggtggcaggctgagactacgcctagcaggcacagag
aggctccctgatacacacgccaccctctggctctactacctgcacccccgcctccaccca
cctggctgggccaaagagcacggctgcaccctcaggcctccttcagccctggtccccctg
cacacggaggaggagtgggaggagatcagacagaggatcagtaatcagcctcatgatgag
gccctctctgaagagttctataaggaccggcctgccattgctgcccactgctttactgag
gggatgaaactggaggccgttgaccctacgtcccctttctgcatcagtcctgccaccgtt
atcaaggtgttcagtgacgagtgcttcctagtaaagatggacagtctccgtggtgatgat
tcaggggcagagggcgttgggtccttcctgtgtcacagggacagtcctgggatctttcct
gcccagtggagccttaagaacggcctcccgctcagcccccctccagggtaccaggggcag
gactttgactgggcggactacctgaaacagtgtcaggccgaggcagcaccacaacactgt
ttccccacagaacagtctgatcacagctttaaagaggccatgaagttggaggcggtcaac
ccaatctcacctgagcacattcacgtggcaacggtgaccaaggtcaaagggcaacatatt
tggcttggcctggaagggctgaaacaggctataccagagctgatagctcatgtggactcg
ttggatatcttccctgtcagctggtgtgagaccaacggttaccccctgctgtaccccatc
aaacccaaagttgaaaagcagaggaggattgctgtggtgcagcctgagaaacaccgagca
ccacccaaatccacaacacctgacacactcaggttgcagttggccagccaatcagagact
ggacaggggaacggaaagtactgctgtcccaagattttcttcaaccaccgctgcttctct
ggcccctacctgaacaagggccgcatcgctgagctgccccagtgtgttggccctggcaac
tgtgtcctggttctcaaagaggtgttgactctgctgatcaactcagcctacaagcccagc
agggtgctcagggagctgcagctagaccaggaggaccgctggcacggccatggagagaca
ctcaaagccaagtacaagggaaagagttaccgggctacggtggagatagtgcgtacagca
gattgtgtggcggaattctgtaggaagacctgcatcaagctggagtgttgcccaaacctg
tttggacctcgcatggttctggagcgctgctcagagaactgctctgtgctcaccaagacc
aaatacacttattattatggtaagaagaaatgtaaacgagtgggccgcccaccagggggg
cattctaacctagaaggaggggtgaagagaagaggtagaaggaggaagaggagaaagcaa
ctatttgtccataagaagagacgctcctcagcctcactagacaacacacctgccggttca
ccacagggcagtggagatgaggaggatctggatgatgagaactctctgagtgacgatact
ggctctgagctccaggatgatcaggacgattcagagtattccattgggaagtctcaacca
cccaccccatccccctctcctcctgcaacgcccagaccaacccgaaaacgcaggaaacct
cgctccccatcttactctgatgatgagaaccacccaccttcaccaaagagcttgagaggt
gaggctccccagaaactgtgtttggacaccagtcccctggagtggagtgtgactgatgtg
gtgtgtttcatcaggaccaccgactgtgctcccctggcacgcatcttcctggatcaggag
attgatggacaggctctgcttctgctcaacctgcccacactgcaggagtgtatggacctg
aaactgggaccagccataaagctgtgtcaccatatcgaaagggtcaaacttgaattctac
cagaaatttgctacatag
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