Oncorhynchus tshawytscha (Chinook salmon): 112219393
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Entry
112219393 CDS
T05605
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
112219393 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112219393 (depdc5)
Membrane trafficking [BR:
otw04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
112219393 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
DEP
Motif
Other DBs
NCBI-GeneID:
112219393
NCBI-ProteinID:
XP_024236367
LinkDB
All DBs
Position
LG20:14674641..14704700
Genome browser
AA seq
1606 aa
AA seq
DB search
MKNKTYKLVVHKKGFGGSDDELVVNPKVFPQVSLGDIIEIAHPTDEYSPLLLQVKSLKED
LQKETISVDQTVAQAFKLRAYQDVVVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKSL
VSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCEM
WDFDIYGDLYFEKAVSGFLSDLFAKWKERYCSHEVTVVLFSRTFYNAKTLEEFPEILRGS
IRQDHEGRFYEDFYRVVAQTERRDEWTSLLVTIKKLFIQYPVLVRLKEAVGFPSGHNSTA
AQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNG
IGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLGDDYNLPHWINHSFYTSKSQNSCSCFTP
RIKLAGRKLHAEKFKNNKEHTLGAPKDENSLPIQVDYDAHDAQVFRLPGPSRAQRSTNFR
VVREREVSGRRSWGSADVSGVLVGGVSPPVRSCGPDEQRSLASDDSLGRVSNILLIPRLP
PAQYGEVSSSLGYTSTRELLEKMMESQRDSSAPGRFTVGSAESTLHVRPGGYTPQRALIN
PFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSEQRDPAHTSAELL
ELAYHEATGRRTASERRQAGENGLYSSGGMEEYTHGSPASSNSTGTPVNRGSSLEDFSSG
SPDPTLLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPEWQTLQNDYTEGCYDLLP
HTDLERRDDEAPVMSAPHVFEEFICQRLMQGYQIIVQPNKRKPQPAVAPPLSSSPLYTRG
LVSRRRPEEEESLYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYTYSLCPPHSD
AHFLSCWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVA
DGEGHWDVYGEGVGTVAGREGMTGTGDWALLDGFIRFLEGLNRIRRRHRSDRIIRKGPAM
KGLQVTGPLSAYPPEPVAPPLGKKGTSALSALLELEQNQKTLEEQQQQGKPSAATSESST
VTMTTTYVDSPRKDAAFILDFIRSPRSSYIYHTQVSTDPAEGGTTDKGGQVGAGVVATGG
AAAQATGDTGPSLATETSGQSGTGALCLSSSSTLMEILEAIKHPTTGVQLLPEQKGLPPN
CFISAEIVHWLVNNVEGVATQGMAVDIMQKMLDEGLVTHASGDAMRTFVYGFYFYRIVAE
KDGERGPTSQLPPPVAQGWSTAALEDFALFQRKWFEVAFVLEERRTCDLPAFLLPWLPSR
PASYASRHSSFSRSFGGRSQAAALLAATVPEQKTATLDVDVNNRSDRTEWCSCYYHGNFS
LNAAFEVKLHWMAVTAAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQL
FIPLHIHRLLRDGSDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFNFPSENK
PQYIHVTGTVFLQLPYSKRKYSSGQQRRRRNSTASASQGLFGSEELVGYYWAYNTMLTKA
WRTGVLGDEKLADRLLRDFTDFCANKDKRLVNFWDSCQEKMNASAP
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataaaacatacaaacttgtggtgcacaagaaaggctttggaggcagtgatgat
gagcttgtggtgaaccccaaggtgttccctcaagtttcccttggggacataattgagatt
gcacaccccacagatgaatacagccctctgttgctgcaggtgaagagcctcaaagaagac
ctccagaaagagacaatcagtgtggaccagactgtggcgcaagccttcaaactccgggca
taccaggatgtcgttgtaaacattgtggatccaaaggatgtaactctggacctcgtagag
ctcacgttcaaagaccaatacattggaaggggagacatgtggcgactgaagaagagtctg
gtgagtacctgtgcttatgtgacacagaaagtggaatttgcagggatcagagcccaggcc
agtgagttatgggtgaaaggagagaaggtcacctgtggctacatcagtgaagacaccagg
gtggtgttcaggtcgacctctgccatggtgtacatcttcatccagatgagctgcgaaatg
tgggactttgatatctacggggatctctactttgagaaagcagtcagtggttttttgtct
gatctttttgccaaatggaaggagaggtattgcagccatgaagtgacagtggtgcttttc
tcacgcactttctacaacgctaaaaccttggaggagtttcctgagatattgagaggttcc
atcagacaggaccacgagggccgtttctatgaagatttctatagggtagtggctcagact
gagagacgtgatgagtggacctctctactggtcaccatcaagaagctcttcatccagtat
cctgtcttggtgcggctaaaagaagcggttggtttcccctccggccataactctactgct
gctcaggggaattaccttgaggccattaacctgtctttcaacgtctttgacaagcactac
atcaaccgcaactttgaccgcaccggtcagatgtctgtggtcatcaccccgggggtgggc
gtgtttgaagtggaccgactgctcatgatcctaaccaagcagcgcatgattgacaatggt
atcggtgtagacttggtgtgtatgggagagcagccacttcatgcagtgcctctatttaag
ctgcacaacaggacagtgcctggagactcacgactgggtgatgactacaacctgccccac
tggatcaaccacagcttttacacatccaaaagccagaactcctgcagctgcttcactcct
cgcatcaagctggcaggacgcaagctccatgcagaaaaattcaagaacaacaaagagcac
actcttggggctccgaaggacgagaacagccttcccatccaggtggactacgatgcccat
gatgcacaggtgttcagactccccgggccgtcccgagcccagaggagcaccaacttcagg
gtggtccgagagagggaagtgagtggaaggagaagctgggggtctgcggatgtgagtggg
gttctagtgggcggtgtgtccccccctgtccgctcttgtgggcctgacgagcagcggagc
ctggcctctgatgacagcctgggcagggtgtccaacatcctgctgatcccccgtctgccc
ccagcccagtacggagaggtcagcagctccctgggctacaccagcaccagagagttgttg
gagaagatgatggaatctcagcgggactccagtgctccggggaggttcactgtggggagt
gctgagtccaccctccatgtgcgcccagggggctacacccctcagagggccctcattaac
ccctttgccccctcacgcatgcccatgaagctcacctccaaccgcaggcgctggatgcac
accttccctgtgggtccgtcaggagaggccatccagatccaccaccagactagacagaac
atggctgaattgcagggcagcgagcagagagaccccgcccacacctccgccgagctcctg
gaactggcctatcacgaggccactggcagacggacagcctcagagagacgacaggcagga
gaaaatgggctgtactccagcggagggatggaggagtatactcatggcagcccagccagc
agcaacagcactggaacaccggtaaaccgtggctcctcgttggaggacttttcctctggc
agtccggatccaaccctgctgctgtctgcccccccgacagtgcctagcttctgttgcacg
gtgggggtagactggaagtctctgaccacacccgcctgtctgcctctcaccactgactac
ttccctgaatggcagaccctgcagaacgactacactgagggctgctacgacctgctgcca
cacactgacctggagaggcgggatgatgaggccccggtcatgagtgcccctcatgtgttt
gaggagtttatctgtcagcggctgatgcagggctaccagatcattgtccaacctaacaaa
aggaaaccccagcctgctgtggccccgcccctcagcagtagtccactctacaccagaggg
ctggtctctcgacgcaggccagaagaggaggagagtctgtactggctcagtatgggccgt
accttccataaagtctgcctgaaggataaaatcatcactgttacccgctaccttccgaag
tacccgtatgagtcagcccagatccagtacacctacagtctgtgtccccctcactctgac
gcccacttcctgtcctgctgggtggagtttggtcacgagagactggaggagtacaagtgg
aactacctggaccagtacatctgctctgctggctctgaggacttcagtttgatagactct
ctgaagttctggcggacccgcttcctgctgctgccggctgggggggctagacgtgtggcg
gacggggaggggcactgggacgtttacggggagggagtgggcacggtggcgggcagagag
ggcatgacgggcaccggggactgggccctgctggatggcttcatccgcttcctggaggga
ctcaaccgcatccgcagacgccaccgctctgacaggatcatcaggaaaggaccggcgatg
aagggtttgcaggtgactggtcctctctctgcctaccctccggagcctgtagcgccccct
ctgggcaagaaaggcacctccgctttatcagctctcctggagttggagcagaaccaaaag
actctagaggagcagcaacaacaggggaaaccctcagctgccaccagtgagtcttccact
gtcaccatgaccactacatatgtggacagccctcgcaaggatgctgccttcattttggat
tttatacgtagccctcgttcctcctacatctatcacacacaggtttctacagatcctgct
gaaggagggaccacagacaaaggtggtcaggtaggggctggggtggtggcgaccggtggg
gctgcagcccaggcaacaggggatacagggcccagcttagccacagaaaccagtggacag
tctggtactggagccttatgtttgtcctcatcctccaccctgatggaaatactagaggcc
atcaaacaccccacaacaggtgtgcagcttctacctgagcagaagggcctgccccctaac
tgcttcatcagtgctgagatcgtccattggctggtcaacaacgtagagggtgtggccaca
caaggcatggctgtcgacatcatgcagaagatgctggatgagggcctggttacccatgca
tcaggggatgccatgaggacctttgtctatggcttctacttctacaggatagtggcagag
aaagacggtgagcgaggccctacatcccagctgccccctcctgtggcacagggctggtca
acggcagccctggaggactttgccctgtttcagaggaagtggtttgaggtggctttcgtc
ctggaggagcgtcgaacttgtgacctcccggccttccttctgccctggctgcccagccgg
cccgcctcctatgcaagtaggcacagctccttcagccgcagctttggaggacgcagccag
gccgcagcactgctagctgccactgtaccagagcagaagacagccaccttggatgtggac
gttaacaatcgaagcgaccgcaccgagtggtgcagctgctattaccatggcaacttctcc
ctcaacgctgccttcgaggtcaagctgcactggatggccgtcactgcagctgttctcttt
gagatggtccaaggctggcacagaaaggctgcctcctgtgggttcctgttggtgcccgtc
ctggaggtgccctttgccttaccctcctacctatatggtgacccgctgcgggcccagctc
ttcatccctctccacatccaccgtctgctgagggacggcagcgacaacctgtttgagggg
tttgaaccagagacgtattgggatagaatgcagctctttcaggaagccatactataccga
ttcggttttgtccaagacaagttttctgcctctgctttcaacttcccgtcagagaacaaa
ccccaatacatccacgtaacaggcacagtgttcctccagctgccctactccaagaggaag
tactctagcgggcagcagcggaggaggaggaattcaacagcatcagccagtcagggcctg
tttggctcggaagagctggtgggttactactgggcctacaataccatgctgaccaaggct
tggaggacgggtgtgcttggggatgagaagctggctgaccgcctgctcagagacttcact
gacttctgcgccaacaaagacaagaggctggtgaacttttgggacagctgccaggagaaa
atgaacgctagtgctccatga
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integrated database retrieval system
