Oncorhynchus tshawytscha (Chinook salmon): 112219434
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Entry
112219434 CDS
T05605
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112219434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112219434
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112219434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
112219434
NCBI-ProteinID:
XP_042158158
LinkDB
All DBs
Position
LG20:13778401..13804740
Genome browser
AA seq
1496 aa
AA seq
DB search
MSLSDQSQQWHPTSVQVTVLQARSLRIKGKNGTNDAYAIMQVAKDKFATSVAEKSVAPVW
KEEATFELPLFHNGNTEKCTLHVHVMHRALVGSDKLLGHAVINLLELSEVKSRNKTEWHK
LLDKAGKPDKDRGEVLVDIQFMKNNLTASMFDLSATDKPRSRLGKFKDKVRGKKKEGLSD
SASAVVPSFTQVLTDSEGEGEGEGGADKEEKKKKNKLKSLFSPKSNLQRHGLSQSMSVLG
PLPEKDSSLSGSPSGLNEDSSEGKNKFKFLTHKRTGSSDSKASQGSLSLGRSKIHAPLAE
QSNLCINGSHLYTEHPHPRSARTGSTFSLASSGHGSMEDLRRAQGRKSSSTSMDSLTALK
QPSPCAEGESSRAEEDEEEEEERVKMDEMKRKEEQERKKLEEERMGKEEQEKRRIGKEVE
RLRFEEEEKTRKEEQENRKRMEEEKIRVEEESRMMEERKRRLKEEGEERVKKKEQEMIRL
QEEEEERMRREEHERMKREDRLRKEDERKMREEEERLKREKEERIKEEEERIRREQEEEM
QRREERLRKMREEEERLRMEEEMREEEVRVKREQDRLRDEERRRTEEEERIKREEEDRLR
KEEEEKRKIREEEERIRRLEEERLRKDEERKIREEEERIRRFEEERLRKDEEERKIREEE
ERIRRLEEERLRKDEEERKIREEEERIRRLEEERLRKDEEERKIREEEERIRRLEEERLR
KEEAETMRLEEERGNEQERSDKEQKERFRVEEENMKTGELRQEEKRRNAQMQEAQRREEA
RAPLEEVEKQMEQYSEAKVTVCNNPFEEVSPTSSFDDSSSNNLFEENPMTTTGPISCRIN
KVSAVKPRPSSWGNPSKPAISSNPFLSSSSPELESSMDSPRGAKENRDAIDPSTNLMEKK
DPAPVAPINQPWARKDNWSSKSHCATPTLAKTKPTKPPPPLRCQSSTALVGSGDDQGSVS
GKDHSSVRQDKGPAPLPPDNQRWAHKDNWPGKSNPGSATPTLTQKTPTKPQPPPRRHSAT
SLVGSEHDLHLNESVSQDDSGVRRDKRPAPLPPDRPNQAPSQTQRDQSMTSVNQGHKDRV
GASMSKVSQRVVQMITPLRSSSTATTEHISGGQSSTHHGNQAEEPMPSATRGLVVAKHNK
GPAPSRPQHLPGKTMPTVDVLDEQSNTEEHDSSVEFGPNNPFAEDCRMEKSSGCGVEQSL
TGERQGSPDSHNQQSCTSTDADLGPFQKRVVGDTTELPTPDVLPAEDVSCPTKSTSAKRA
RAPLPPVKITSTFREEGAGKQSSGKLQSPGAPTSSKLSSGNWVKKQNGGVGVALPCVTLA
QPPCFPSPAPSSIPHPEPLKGSGGRRDCPPQTTSSVPGQKTLLHAEALPSITEQYSGEEA
GGRGDRSASSTRRPHPVKPLSSLENQPASNIHEGQAGKSTGILGGLQEKIKVKDTEVKGP
YSQLTQEELISLVLKQQEQLSKRDDKIKELEQYIDNLLVRIIEEQPSILMTMNSLK
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgtctctatcggaccagagccaacagtggcatcccaccagcgtacaggtaactgtgctt
caggcaagaagcctgaggataaagggaaaaaatggcaccaacgacgcatacgccatcatg
caagtggccaaggataaattcgctacatcggtggcagaaaagagtgtggcaccggtgtgg
aaagaggaggccacgttcgagctgccgctcttccacaacggtaacacagagaagtgtacg
ttgcatgtccacgtaatgcaccgggctctcgtgggatcggacaagttgctcgggcacgca
gtcatcaacctgttggagctcagcgaggttaaatcccgcaataagactgaatggcataag
ctgttggataaggcaggcaagccagacaaagacaggggagaggtgctggtggacatccag
tttatgaagaacaacctgacagccagcatgttcgacctctctgctacagacaagccgcgc
tcccgcctgggcaagttcaaggacaaggttcgaggcaagaagaaggagggtctgtcggac
tcggcgtctgccgtggtgccgtccttcacccaggttctgacggacagcgagggagagggg
gaaggggagggaggtgcagacaaagaagagaaaaagaagaaaaacaagctgaagtctctg
ttttcccccaagtctaatctgcagcgtcacggactgtctcaatccatgtctgtcctgggc
cctctgccggagaaggactcctcactgagtggcagcccctcaggcctcaatgaggactcc
tctgaaggtaaaaataaattcaagtttctgacccataagcgcacaggcagttccgacagt
aaggcttctcagggctccctgtctctagggcgctctaagatccatgccccgcttgcagag
cagagtaacctgtgcatcaacggcagtcacttgtacacagaacatccccatccccggagc
gcacgcaccggctccaccttcagccttgccagctcaggccacggttccatggaagaccta
cgcagggcccagggccgtaagagctccagcacctccatggactctctcacggccctgaag
cagccctcaccctgtgcagagggggagagcagcagggcagaggaggatgaggaggaggag
gaagaaagagttaagatggatgagatgaagagaaaggaagagcaggagagaaagaagtta
gaggaagagaggatggggaaggaggaacaagagaaaaggaggattgggaaggaggtagaa
agacttaggtttgaggaggaagagaaaacaaggaaggaggagcaggaaaacagaaagagg
atggaggaggaaaagattagggttgaggaggaaagtagaatgatggaagagaggaagagg
agactgaaggaggagggagaggagagggtaaagaagaaagaacaggaaatgattaggtta
caggaggaagaagaggaaaggatgaggcgagaagagcatgaaagaatgaagagggaggat
agactgaggaaggaggacgagaggaaaatgagggaggaggaggaaagattgaagagggag
aaagaggagaggattaaggaggaggaagaaaggattaggagagaacaagaggaagaaatg
caaagaagggaggaacggctgaggaagatgagggaggaggaagaaagactaaggatggaa
gaggagatgagggaggaagaagtaagagtgaagagagagcaggataggctgagagatgag
gagagaagaaggacagaggaggaggaaagaattaagagggaagaggaggataggctgaga
aaggaggaagaggagaagaggaagatcagggaggaggaagagaggataaggagattagag
gaggagaggctgaggaaggatgaagagaggaagatcagggaggaggaagagaggataagg
agatttgaggaggagaggctgaggaaggatgaagaggagaggaagatcagggaggaggaa
gagaggataaggagattagaggaggagaggctgaggaaggatgaagaggagaggaagatc
agggaggaggaagagaggataaggagattagaggaggagaggctgaggaaggatgaagag
gagaggaagatcagggaggaggaagagaggataaggagattagaggaggagaggctgagg
aaggaggaagcagaaacaatgaggcttgaagaagaaaggggcaatgaacaggagaggagt
gataaggagcagaaagaaagatttagggtagaggaagaaaatatgaaaacaggggagttg
agacaggaagagaaaaggagaaatgcacagatgcaggaagcgcaaaggcgtgaggaggcg
agggcaccgttggaggaagttgagaagcagatggagcagtatagcgaggcaaaggtcacc
gtgtgcaataatccttttgaggaagtctctcccaccagttcatttgatgacagctcttca
aataatctgtttgaggagaaccctatgaccactactggacccatcagctgccggataaat
aaagtatcagcagtcaagccaagaccctcttcatgggggaacccttcaaagcctgctata
tcttccaaccccttcttatcgtcctcgtctcctgaactggaaagttctatggactccccc
agaggcgcaaaggaaaatagagacgctattgacccgtctactaatctgatggagaagaaa
gaccctgcccctgtggctcccatcaatcagccctgggctcgtaaggacaactggtctagt
aaatctcattgtgccacacctaccctcgctaaaacaaagccaacaaaaccgccccctcca
ctcagatgtcaatcttccactgcattggtgggaagtggggatgaccaggggagtgttagt
ggtaaggaccattccagtgtcagacaggataagggccctgctccactgcctccagacaac
cagcgatgggctcataaggacaactggcccggtaagtccaaccctggttctgccactcct
accctcacccaaaaaacgccaacaaaaccgcagcctcctccaagacgccactctgccacg
tcattggtgggaagcgaacatgacctgcacttaaatgagagtgttagtcaggatgattcc
ggtgtcaggagggacaagcgtcctgctccactgcctcctgacagaccaaaccaggctcca
agccagacacagagggaccagagtatgaccagtgtgaatcagggacataaggacagagtg
ggtgcctccatgtccaaagtttctcaacgtgtggtacagatgatcacgccgctgagatct
tcctccacagctacaacagagcacatcagtggaggccagagctctacccaccatgggaac
caagcagaggaacccatgccatcagccactagggggttggtggttgcaaaacacaataaa
ggtccagcaccctccaggccccagcaccttccagggaagacgatgccaacagttgatgtg
ttagatgagcaatcaaatactgaggaacatgactcttcggttgagtttggtccaaataat
ccctttgcagaagactgcagaatggagaagtcctctggatgtggtgtagaacagagtcta
actggtgagcgccaggggagcccagactctcacaatcaacagagttgtacctccacagat
gcagatctaggtccgtttcagaagcgtgtggttggggacacaactgagcttccaacgcca
gatgttctgccagccgaggatgtctcctgtcccaccaaaagcacatcagcgaagcgggcc
cgtgctcccttgcctccagtgaagataacatccacctttagagaggagggagctggtaaa
cagagttctggaaaactacaaagcccaggggctcccacttcgagtaagctttcctcaggt
aactgggtaaaaaagcagaatggcggggtgggtgtggcactaccatgtgttacacttgcc
cagcccccatgtttcccctcacctgccccctcctccataccccaccccgagcccctgaag
ggatcagggggcaggagagactgccctccccagacaacaagctctgtccctggccagaag
accctgcttcatgctgaagctctgccctccattacagagcagtacagtggagaggaggca
ggagggagaggggacaggtctgcctcaagcacacgcaggccccacccagtaaagcccttg
agttccctggaaaaccagccagcttccaacatccatgagggacaggctggcaaatctaca
gggatcctcggtggccttcaagagaagataaaggtcaaagacacagaggtcaaaggtccc
tactcccagctgacccaggaagagctgatctccctggtgctaaagcagcaggagcagctc
tccaaaagggacgataagattaaggagctggagcagtacattgacaacctgctggtgcgc
atcatcgaggagcaacccagtatcctgatgaccatgaactcactcaaatga
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integrated database retrieval system
