Oncorhynchus tshawytscha (Chinook salmon): 112219487
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Entry
112219487 CDS
T05605
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112219487 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112219487 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112219487 (pdlim5b)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
112219487
NCBI-ProteinID:
XP_024236547
UniProt:
A0A8C8IUD4
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Position
LG20:complement(12005761..12078959)
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AA seq
621 aa
AA seq
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MSSNYSVSLVGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKARMSVGDVVLSIDGIATN
SMNHLEAQNKIKACTDDLNLTLQKASSVPKADAPKNEPLEIIKPVPITYPAPPSTFTSPS
PQPSAAYNKTARPFGGGSSVGVVTTSLTAPKVASIPSASSAFTPAAPSSQQPQPPFPLGS
HPRSPAPPIAAQPSSAPPTRPSSGRSPFTTTSSSSSSSPARVTAPSSNPGAPQSSCYNTP
INLYSNANACEVAIGQRRGLLEAQGVVVDQIKDQFNGNRVEPELNHASPLSEASKKRMIE
DTEDWHPRTGTSQSRSFRILAQITGTENDQAQENSTGKKEVVEDALPSAHVTSVKTMTKV
PGAPRNGVPPPTFKTPSAQVKPSWPAGGSAGFPKGGAAPSFGRVSNTAPVPKGPDRPAPQ
AHPKDQDSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHTSLVE
SGFVEERGTVYCAHCYEEFFAPTCTSCKQKVLGEVINALKQTWHVYCFLCASCQQPIRNN
TFHMEDGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSLEG
QAFFSKKDKALCKKHAHTVKI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtctccctggttggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcacaatctcacggctgaccgatgggggcaaggca
gccaaagccagaatgagtgtgggagatgtagttctgtcgatcgacggcatcgccaccaac
agcatgaaccacctggaggcccagaacaagatcaaagcctgcacagacgacctcaacctc
accctgcagaaagcttccagtgttcccaaggcggatgcaccaaagaacgaaccgctggag
atcattaagcctgtgccaatcacctacccagccccgccatccacattcaccagcccctcc
cctcagcccagtgctgcctacaataagacggcccgcccctttggcgggggcagcagtgtg
ggtgtggtcactacctccctgactgccccaaaagtggcctcaatcccttctgcatcgtct
gctttcacccccgctgccccctcctcccagcagccccagcctcccttcccactaggcagc
cacccccgctctccagccccacccatcgcagcccaacccagctcagccccacccaccaga
cccagctctggccgttcccccttcaccaccacctcctcgtcctcctcttcctccccggcc
agagtgactgccccctcctccaatcctggtgctccgcagtcctcttgctataacacgccc
atcaacctgtactccaacgccaacgcctgtgaggtggccataggacagaggcggggcctg
ttggaagcccagggtgtggtagtcgaccagatcaaagaccagttcaacgggaacagagtt
gaaccagagttgaaccatgcctcaccactcagcgaggccagtaagaagcgtatgatcgag
gacacggaggactggcatcctcgcaccggcacctcccagtccaggtccttcagaatcctg
gctcagatcactggcacagagaacgaccaagcccaggagaacagcactggaaagaaagaa
gttgttgaggatgccctgcccagtgctcacgtcacatcagtgaagaccatgaccaaagtc
ccaggagcccccaggaacggtgtccccccacccaccttcaagaccccctctgcccaggtc
aaaccctcctggccggctggaggttcagcaggtttccctaagggtggagcggcgccctct
tttggccgggtcagcaacactgcaccggtacccaaaggtcctgaccgccctgctccccag
gcgcaccccaaggaccaggactccctggtgcagcgggccgaacacatcgcagcaggaaca
cgcacacccatgtgtggccactgtgacaaggtcatcagaggtccgttcctggtggccatg
ggtatgtcgtggcaccctgaggagtttaactgttcccactgccacacgtctctggtggag
tcgggcttcgtggaggagaggggaacagtgtactgtgctcactgctatgaagagttcttt
gcccctacctgcaccagctgcaagcagaaggtcctgggggaagtcatcaatgccctgaag
cagacctggcatgtgtactgcttcctgtgtgcatcctgccagcagccaatcagaaacaac
accttccacatggaggacgggctgccatactgtgaaagagattattaccaactctttggt
accagttgccatggttgtgacttccccatcgaggcaggagacaagtttctggaggcgttg
ggattcacctggcatgatacctgcttcgtatgtgcagtctgcagcaccagtttggagggc
caagccttcttctctaaaaaggacaaggccctgtgcaagaaacacgcccacacagtcaag
atctga
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