Oncorhynchus tshawytscha (Chinook salmon): 112219495
Help
Entry
112219495 CDS
T05605
Symbol
arvcfa
Name
(RefSeq) armadillo repeat protein deleted in velo-cardio-facial syndrome
KO
K28154
splicing regulator ARVCF
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112219495 (arvcfa)
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112219495 (arvcfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_2
HEAT
HEAT_EZ
V-ATPase_H_N
Adaptin_N
Arm_2
Atx10homo_assoc
Motif
Other DBs
NCBI-GeneID:
112219495
NCBI-ProteinID:
XP_024236560
LinkDB
All DBs
Position
LG20:11419549..11435765
Genome browser
AA seq
637 aa
AA seq
DB search
MELLMEPSRTRGGYEEALMSQVDGDPTSFFQAMSRAQMLQFPHKRCSMVSLDSIRKDPRW
RDPNLREVITMLSHPMDPVKSNAAAYLQHLCYENDHMKQDVRQLKGVPVLVGLLDHPKAE
VHRKACGALRNISYGKDHHNKVAIKNCDGIPALVRLLRKSSNMEVRELVTGTLWNLSSHE
PLKMMIINHGLQTLTDEVIIPHSGWRRDPTEHSRPQETEWTTVFKNTSGCLRNVSSDGAE
ARQRLRECEGLVDALLHALQSAVAHKETDNKSVENCVCILRNLSYHVHKEVPGAERFQEP
VANQVPGLGGNQKKKKEADCFGGKKPKEEWFSQSWRNGPSDKKYGTLALPKRTEPMKGLE
LLYQPEVVRLYLSLLTCSQNHNTLEAAAGALQNLAAGHWAWSSYIRATVRKEKGLPVLVE
LLRSDGDKVVRAVAIALRNLAIDRRNKDLIGSYAMRDLVSNLPCGQQRPAKNLEGDTVVA
ILNTIHEIISDSPENARGLIQGHAIQKLVAINKTSQSGRETKAASHVLQTVWAYKDLRNS
LYKGGWNKSHFKSTTSGMPKKPKSGKSGYDDITLPLMEKNQDGYSTVEQGDRVGDGPGHM
MEREPLQSIPERKHFIRAGRPAVGLVERKPPPLDSWV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggagctcctgatggagccgtccagaaccagagggggatacgaggaggccctcatgtcc
caagtggacggagaccccacctccttcttccaggccatgtccagggcccagatgctacag
ttcccccacaagcgctgcagcatggtcagcctggacagcatccgtaaggacccccgctgg
agggaccccaacctgagggaggtcatcacaatgctcagccaccccatggacccggtcaaa
tccaacgccgctgcctacttgcagcacctgtgctacgagaatgaccacatgaagcaggac
gtcaggcagctgaagggggttccagtactggtgggcctcctggaccaccctaaagccgag
gtccaccgcaaggcctgtggagccctgaggaacatctcctacgggaaagaccaccacaac
aaggtggccatcaagaactgtgacggcatccccgccctggtcagactgctgagaaagtcc
agtaacatggaggtcagagagctggtcacagggaccctgtggaacctctcctcccatgag
cctctgaagatgatgatcatcaaccacgggctccagacactgactgatgaggtcatcatc
ccccactctggctggaggagagaccctactgagcactccagaccccaggagacagagtgg
accaccgtgttcaagaacacctcaggatgtctcaggaatgtgagctcagatggggcagag
gctcgccagagactgagggagtgtgaggggctggtggacgcactcctccatgcccttcag
tcagctgtcgcacacaaggagaccgacaataagtcggtagagaactgtgtctgcatcctg
agaaacctctcctaccacgtccacaaagaggtgccgggggcggagagatttcaggaaccc
gtggccaatcaggtgccagggttaggagggaaccagaagaaaaagaaggaggcagactgt
tttggagggaagaagccaaaggaggagtggttcagtcaaagctggagaaatggaccaagt
gataaaaaatatggtactctggctttacccaaacgcacagaaccaatgaaaggtctggag
ctgctttaccagccagaggttgtgaggctgtacctgtctctcctcacttgcagtcagaac
cacaacaccctggaggcagcagccggagcgctgcagaacctcgctgcaggccactgggct
tggtccagttacatccgggccacagtgaggaaggagaaaggtctgcctgtcctggtggag
ctactgcgttcagatggtgataaagtggtccgggctgtagctattgctctccgcaacctg
gccatagatcgccgcaacaaagacctcatagggagttatgccatgagggacctggtcagt
aacctgccctgtggtcaacagaggccagccaagaacctggaaggggacacagtggtggcc
attctgaacactatccatgagatcatctcagacagccctgagaacgcccgaggtctcata
cagggccacgccatccagaaactggtagccatcaacaagacaagccaatctgggcgagag
accaaagcagcatctcatgtcctgcagacagtgtgggcttacaaggacctaagaaacagt
ctctacaagggaggctggaacaagagccactttaagtcaacaactagtggaatgcccaaa
aaacccaagagcggaaagtcaggctatgatgacatcacactgcctctgatggagaaaaat
caagatggatactccactgtggagcaaggggacagagtgggtgatgggccaggccacatg
atggagagagagcctctccagagtatcccagagaggaagcacttcatccgggctggaagg
cctgcagtgggcctggtggagcgcaaacctccacccctcgactcctgggtctga
DBGET
integrated database retrieval system
