Oncorhynchus tshawytscha (Chinook salmon): 112219499
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Entry
112219499 CDS
T05605
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112219499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112219499
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
112219499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd1
Cnd3
ARM_ECM29
Motif
Other DBs
NCBI-GeneID:
112219499
NCBI-ProteinID:
XP_024236565
LinkDB
All DBs
Position
LG20:11315583..11366613
Genome browser
AA seq
2714 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHSLNQVSTEHIELKDNLGSDDPEGDVPVLLQTVLSRNPNIFREKNIMQQPIMPQ
YKMSQNSMHGSPASTNYQQSTISHSPSSRFASPQMGSGARFTPQQNSPVSSPYAPQSPAS
YMQQYPHPPSYSQHQQIQQELHGSPVVPAAPSYSGSPKRPVQPCLEVQTQPQASPHQNPS
TPTLVASPVVPASMRNIHDNKVSGQISSNSANHNARHGSNEDYMNIVHRLGNEESDPSMR
NASFPLRSPQSVSSPVGSEGTPKGSRPGLILQSPPPYAPPRDAAPDLLLDSPDHKKKQKK
LTKEEKEQLEKAAMYDIVSSPSKDSTKLTLKLSRVKSSELDQSGELLSGVEDQDTDLAYN
SLQFSRTQQDPAHRLAPGQGEQSGYQQVPVLQNTKQAIGVISGAVYDDAEMDALAEIERI
ERETLIERERCSKEVQDKDKPLKKRKQDSYPQEPGAGGTAGVTQPGVGGGNVGSKLAPQE
ASAASNGASRPALMVSIDLQQAGRADGQPEVNMGTPTPAVEARRWPEERLGPEEGSDSTG
VLRLKSKTDGERLQTADGRPEVIKQRADTPKKLGPDGRPETPKHKHENRRDSSKHRHDGK
PDNGKARPDSRTPDTPRQRHEGRSDSGHREERSRDSDPSRIRRPETPSKSSRGEHDSKHG
RDRDRERADKDRERKHRTEAGEPRDRRSPEQRSRPESPRVKQEGRGGVDPSGRQRTDRPC
PNLKPPNKEERRSGEEKRSGDGSRNRQDSKQQQQPAESKQEFPAYLLGGVKSGGFKNFVI
PKMKRDKDGHVLAAEVRKPGSGLGPVMEGWSEPRVKLERLGLVEEMKTGAKPVVVLQKLS
IDEVQKIIREREDRNARGSKSSKSRHSHEKSGKGGLDESVLKELPPHLIAEIESTMPLCE
RVKMNKRKRSTVNEKPKYAEVDSDDSDDDSVTESARKRHKKEREKTWAPDERERRGSGEH
RRSSGGSQERRKGSGRRYRERSPEESDEESPPPSMSDLARKMKKEKQKKRKSYEPKLTPE
ELMDSSTFKRFSASVDNILESLEDIDFNAMDDDEIPQELLLGKHQLSELGSESAKIKAMG
ITFRLPSDKLVKVLNILEKNIQDGSKLSTLMNHDADAEDEERLWRDLIMERVTKSADACL
TALNIMTSSRMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVNPHGGGYLSSRAKR
AKSSTHKQRVIIMLYNKVCDIVSNISELLEIQLLTDTTILQVSSMGITPFFVESVSELQL
CAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDKDGEPMYIQMVTA
LVLQLIQCVVHLPSNRDSHDDEYNKKVDQDVLITNSYETAMRAAQNFLSVFLKKCGSKQG
EEDYRPLFENFVQDLLSTVNKPEWPASELLLSLLGRLLVHQFSNKQTEMALRVASLDYLG
TVAARLRKDAVTSQMDQRSIDRILKETQGNDETQQLQKALLAYMDENAETDPSLVFARKF
YIAQWFRDTLTETEKAMKSQNQRGDEDSSEGQHHAKDIESTGEIMQRAEARKKYLRNIIK
TAPSQFSTLRMNSDTVDYDDSCLIVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKA
MKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDM
LIERILDTGISVRKRVIKILRDICLEQPTFNKITEMCVKMIRRVNDEEGIKKLVNETFQK
LWFTPTPNHDKDAMTRKILNITDVVSACKDTGYDWFEQLLQNLLKTEEDASYKPARKACV
QLVDNLVEHILKYEESLADIENKGVNSNRLVSCITTLFLFSKNRAQLMVKHAMTMQPYLT
TKCNTQSDFMVICNVAKILELVIPLMEHPSETFLTTIEEDLMKLTIKYGMTVVQHCVSCL
GAVVNRVTHNYKFVWACFNRYYGALTKLKTQHSEDCNNPVLAANKPALLRSLFTVGALCR
HFDFDQEEFKGPSKVVIKDKVMELLLYFTKHEDEEVQTKAIIGLGFQFIQYPGLMFMQDV
KTLYNGILSDRKSSVNLKIQVLKNLQTYLQEEDSRMQEADQQWKKLSKQEDLKEMGDISS
GMSSSIMQLYLKQVLEAFFHTQSNVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPEP
TMRNKADQQLVEIDKKYTGFIHMKAVAGMKMSYQVQQAIWSAKGTVIRGYRQDETTSALC
AHLFSMVRTNRQHRRAFLISLLNLFDDSSKMEVNMLLYIADNLACFPYQSQEEPLFIMHH
IDITLSVSGSNLLQSFKESLLKEPRRREKKQKERKYHSEEDNSEEEGRHSSRSNSSDDEV
VHRPKKPKHRAQAHVESDSDSDLEMEDLDKVMQRLPDNPIPLLDFANASQGILLLLVLKQ
HLKNLYGFSDSKIQKYSPTESAKVYEKAVNRKSHVHFSPRQTLDFLNSDLANVELTYDIK
RRIVKQYLDFKLLMEHLDPDEEDEEGEASASANARNKAITSLLGGSSHQDHKNHHQAPIE
TDDDESDGDEKTPGSSRRSRKHGDSAEASGHMNETVGSMDVIALCCPKYKDRPQIARVIQ
KTNTGYRVHWMAGSYSGVWAEAKKRDGRKTVPWVDTIKESDIIYKKIPLTSAHKLTNRVV
QTLRSLYSAKDGTS
NT seq
8145 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccattactactcttgctgggatcgctagccttaca
gacttgttaaaccagctgcccctgccatcccctctccctgccaccaccactaagagtctg
ctgtacaatgggaggatcgcggaggaggtcaactgtctgctggcctgccgggatgagaac
ctggtgtcccagctggctcacagcctcaaccaggtttccaccgagcacatagagctgaag
gacaatttgggcagtgatgacccggagggtgatgtgcctgtgctgctgcagacagtgctc
tctaggaaccccaacatcttcagggagaaaaatataatgcagcagccaataatgccgcag
tacaagatgtcccagaattccatgcatgggagtccggcgtcgacaaactaccagcaatcc
actatctcacacagcccttctagtcgctttgcatctccacagatggggtctggcgctagg
ttcacgccccagcagaacagccctgtgtctagcccttacgccccccaaagccctgcaagt
tacatgcagcagtaccctcacccccccagctattctcagcaccaacagatccagcaagag
ctgcatggttcccctgtcgttccggctgcaccctcttattcaggaagccccaagaggcct
gtgcagccctgcctagaggtgcagacccagccccaggcctccccccaccagaacccctcc
accccaaccttagttgccagtcccgtggttcctgctagcatgcggaacatccacgacaac
aaggtctccgggcaaatttcaagcaactcagccaatcacaatgccagacatggctcgaac
gaagactacatgaacatagtccacagactagggaatgaggagagtgatccttccatgaga
aatgcctccttcccgctccgatcgccccagtctgtttcttcccctgtgggcagcgaaggg
accccaaaagggtcacgacctggcctcattctgcaatcccctccaccttatgctcccccc
cgtgacgccgctcccgacctcctcctggactctcctgaccacaagaagaagcagaagaag
ctaactaaagaggagaaagagcagttggaaaaagctgccatgtacgacattgttagctct
ccctctaaagactccaccaagctgaccctcaaactgtcccgggtgaagtcctctgagttg
gaccagtccggagagctcctatccggggtagaggaccaggacactgacctggcctacaac
agcctgcagttctcccggacgcagcaggaccctgcccacaggttagccccgggccagggg
gagcagtcaggctaccagcaggtccctgtgctccagaacaccaaacaggcaataggggtg
atcagcggagctgtgtacgacgatgctgagatggacgcgcttgctgagatcgagaggata
gaacgagagacgctcatagaaagggagcgctgctccaaagaggttcaggataaagacaag
ccactgaagaagcggaagcaggactcgtatccccaagagcctggcgctggtgggacagcg
ggggtaactcagcctggcgtgggagggggcaatgttggcagcaagttggcaccccaggag
gctagtgcagccagtaatggtgccagccggccagccctcatggtcagcatcgacctgcag
caagcaggcagagctgacgggcagccagaggtgaacatgggcacccccaccccagccgtg
gaggcccggcgctggcctgaggaacgcctgggtccagaggaaggctccgactctaccgga
gttctgcggctaaagtccaagacggatggagagcgactacagactgcagacggccggcca
gaggtcatcaagcagcgcgccgacacccccaagaagctgggccccgacggccgaccggag
acccctaaacacaagcacgaaaacagaagagactcgtccaaacacagacacgacggaaaa
cctgacaatggcaaggcccgacctgacagcaggacgcctgacacgccacgacaacggcac
gagggccgctcagactctggtcacagggaagagaggtctcgggacagcgacccatcccgt
atccgcaggccagagacccccagcaagtccagcaggggagaacacgactccaaacatgga
cgggacagagacagggagcgggcggataaagacagggagaggaaacacaggacagaggca
ggggaaccacgggaccgccggtctccagagcagcgctccaggccagagagcccgcgggtt
aagcaggagggccgagggggggtggaccccagtgggcgccagaggactgaccggccatgc
cccaacctcaaaccccctaataaagaggagaggaggagcggggaggagaagaggagtggg
gacggcagcaggaaccgacaggactccaagcagcaacagcagcctgctgaaagcaaacag
gagttccctgcctacctgctagggggggtaaagtctggaggctttaagaactttgtgatt
cccaagatgaagcgggataaggatgggcatgtgttggcagctgaagtgaggaagcctggg
tctggtctggggcctgtaatggagggctggagcgagccccgggtcaagctggagcgactg
ggactggtagaggagatgaagacaggagccaaacctgttgtggtgctgcagaaactcagc
atcgacgaggtgcagaaaatcatcagggaaagggaggacaggaacgcacgcggctccaag
tcctccaagagcagacactcacatgagaagtctgggaaaggaggtcttgatgaatcagtg
ttgaaagaactgcctcctcatctcattgctgagatagagtccaccatgccactgtgtgag
agagtgaagatgaacaaacgcaagcgcagcaccgtcaacgagaagcccaagtacgccgaa
gtcgactccgacgactcagacgacgactctgtgacggagtctgcacggaagcgtcacaag
aaggagcgagaaaagacgtgggcgcctgatgagcgggagaggagaggctcaggagagcac
cggaggagtagtgggggctcccaggagcggcgcaagggatctggcaggcgctaccgagaa
cgcagcccagaggaatcggatgaggaatccccaccacccagcatgagtgaccttgccaga
aagatgaagaaggagaaacagaagaagaggaagtcatacgagcccaagctgacaccagaa
gaactgatggactcctccacgttcaagaggttctcagccagtgtggacaacattctggag
agcttggaggacattgacttcaacgccatggatgatgatgagatcccacaggagcttctg
ctggggaaacaccagctgagcgagctgggcagcgaatctgctaagatcaaggccatgggc
atcaccttcaggcttccatctgataagttggtgaaggtcctgaacatcctggagaagaac
attcaggacggttccaagctctccacactgatgaaccatgacgcagacgcagaagacgag
gagcggctgtggcgtgacctcatcatggagcgcgtgaccaagtctgcagacgcctgtctg
acggccctcaacataatgacgtcgtcccgcatgcccaaggcggtgtacatcgaggacgtg
attgagagggtgctgcagtacaccaagtttcacctgcagaacaccctctaccctcagtat
gaccctgtctacagagtgaaccctcatggaggtggctatctgagctccagggctaagaga
gctaaaagctccacacacaagcagagggtgatcatcatgctctacaacaaggtgtgtgac
atcgtcagcaacatctctgagctcctggagatccagctgttgacggacaccaccatccta
caggtctcctccatgggcatcactccattctttgtggagagtgtcagtgagctacagctg
tgtgccatcaaactagtaaccgcggtgttctctcgctatgagaagcacaggcagctcatc
ctggaagagatcttcacctctctggccagattacccaccagcaaacgcagcctcaggaac
ttcaggctgaacagcagtgataaggatggggagcccatgtacatccagatggtcacagct
ctggtgcttcagctcatccagtgtgtggtgcacctccccagcaacagggacagtcacgat
gatgagtacaacaagaaggtggatcaagatgtcctgatcactaactcttatgagacggcc
atgagagcagctcagaacttcctgtccgtcttcctaaagaagtgtggcagtaagcaggga
gaggaggactaccggccgctgtttgagaactttgtccaggacctgctgtctacggtgaac
aaaccagagtggccagcttcagagcttctcctcagtctgctgggacgtctactggtgcac
cagttcagtaataagcagacggagatggctctgagggtggcatcgcttgactacctgggc
acggtcgctgcccgcctgcgcaaagacgcagtcaccagccagatggaccagcgctccatt
gaccgcatcctcaaagagacccaaggcaatgatgagacgcagcagctacagaaagccctg
ctggcctacatggatgagaacgcagagacggatccatctctagtttttgccaggaagttc
tacatagctcagtggttcagggacactttgacagagacagaaaaggccatgaagtctcag
aaccagcgaggggatgaggactcttctgaaggccagcaccacgccaaggacatcgagagc
actggcgagatcatgcagagagctgaggctcgcaagaagtaccttcgcaacatcatcaag
accgcgccctcgcagttcagcacactgaggatgaactctgacactgtggactatgacgac
tcctgcctgattgtcagatatttggcctctatgaggccgttcgcgcagagcttcgatatt
tatttaacacagatcctgagagtgctgggggagagtgccatagctgtcagaactaaagcc
atgaagtgtttgtctgaggtggtggctgtagaccccagtattctagctaggttggacatg
cagcgtggggtccatggtcgtctgatggacaactccaccagtgttcgcgaggctgcagtg
gagctgctgggacgctttgtgctgagcagaccccaactcaccgagcagtactacgacatg
ctgatcgagagaatactggacacgggtatcagtgtgaggaagagggtgatcaagatcttg
agagacatctgtctggagcaacccaccttcaacaagatcactgagatgtgtgtcaagatg
atccgcagggtcaacgacgaggagggcatcaagaaacttgtgaatgagaccttccagaaa
ctctggttcacccctacacccaatcacgataaagacgccatgacccgtaagatcctcaac
atcacagacgtggtgtctgcatgcaaagatacaggctatgactggtttgagcagctactt
caaaacctgctgaagacggaggaagatgcttcctataaaccagccagaaaggcctgcgtt
cagctggtggacaatctagtggaacacatcctcaaatacgaagagtctctcgctgatatc
gagaacaagggggtgaactctaatcgtctggtgtcttgcatcaccaccctcttcctgttc
agtaagaatcgagcccagctgatggtcaaacatgccatgaccatgcagccttacctcacc
accaagtgcaacacccagagtgacttcatggtgatctgtaacgtggccaagatcctggag
ctggttatccctctgatggagcacccctctgagaccttcctcaccaccatagaggaagac
ctgatgaagctcaccatcaaatacggcatgacggttgtgcaacactgtgtgagctgtctt
ggcgctgtcgtgaaccgggtcactcacaactacaagtttgtttgggcttgtttcaaccgt
tactatggtgccctgaccaagctgaagacccagcactcagaggattgcaacaaccctgtt
ctggctgctaacaaaccggccttgctgcgctcgctgttcactgtgggggcgctctgtcgc
cactttgactttgaccaggaggagttcaaggggcccagcaaggttgtgataaaggacaaa
gtgatggaacttctgctgtacttcaccaaacatgaagatgaggaagttcagaccaaggcc
atcattggtctaggcttccagttcatccagtacccagggctgatgttcatgcaggatgtg
aagactctgtacaacggcatcctgtcggacaggaagagctccgtaaacctgaagatccag
gtgctgaagaacctgcagacatacctgcaggaggaggattctcgcatgcaggaggccgac
caacagtggaagaagctgtcgaagcaggaggacctgaaggagatgggggacatctcgtca
ggcatgagcagctccatcatgcagctgtacctgaagcaggtgctggaggccttcttccac
acacagtccaacgtacgacactttgccctcaacgtcatcgccctgacgctcaaccagggc
ctcatccatcctgtgcagtgtgtgccctacctgattgccatgggaacggacccagagccc
accatgaggaacaaggctgaccagcagctggtggagattgataagaagtacaccggcttc
atccatatgaaggctgtggcggggatgaagatgtcctaccaggtacagcaagctatctgg
tcagctaagggtacggtgatccgtggctaccggcaggacgagaccacctcggccctctgc
gcccacctcttctctatggtccgaaccaaccggcagcaccgacgagccttcctcatctca
ctgctcaacctgtttgatgacagctcgaagatggaggtaaacatgctcctgtacatagca
gacaacctggcctgtttcccctaccagagccaggaggagcccctgttcatcatgcaccac
atagacatcaccctgtctgtgtccggcagcaacctgctgcagtccttcaaggagtccctt
ctcaaagagccgaggcggcgggagaagaagcagaaagagaggaagtaccactcggaggag
gataactctgaggaagaggggcgtcacagcagccgctccaacagcagtgacgatgaggtg
gtccacaggcccaagaagcccaaacaccgggcccaggcccacgtggagtctgactctgac
tctgacctggagatggaggacttggacaaggtgatgcagcgtctgcctgacaaccccatc
cccctgttggactttgccaacgcttcgcagggtatccttctgctgctggttctcaagcag
cacctaaagaacctctatggcttctcagacagtaaaatccagaagtactctccgacggaa
tcggctaaggtgtacgagaaggctgtgaacaggaagagtcacgtgcacttcagcccacgt
cagacattggactttttaaattctgacctggccaatgttgaactcacctacgacatcaag
aggaggatcgtcaaacagtacctagatttcaagttactgatggagcacttggaccctgat
gaagaggatgaggaaggtgaggcgtcggccagcgctaacgccagaaacaaagccatcact
tcactgctgggagggtccagccaccaggaccacaagaaccaccatcaggctcctatagag
acggacgacgacgagagcgacggagacgagaaaaccccagggtcatcacgaagatccagg
aagcacggcgactctgcggaggcatcaggtcacatgaacgagacggtaggttccatggac
gtcatcgccctctgctgccccaagtacaaggaccggccacagatcgcccgcgtcatccag
aagaccaacacgggctacagggtgcactggatggctgggtcctactctggagtctgggct
gaggctaagaaacgggacggacgcaaaactgtgccttgggtggacactatcaaggagtct
gacattatttacaagaaaatacccttgacgagtgcacacaagctgacgaacagagtggtg
cagactttacggtcactgtactcagccaaggacggaacttcctaa
DBGET
integrated database retrieval system
