Oncorhynchus tshawytscha (Chinook salmon): 112219544
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Entry
112219544 CDS
T05605
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X3
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112219544 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112219544 (taf4a)
03036 Chromosome and associated proteins [BR:
otw03036
]
112219544 (taf4a)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112219544 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
112219544 (taf4a)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112219544 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF7438
Motif
Other DBs
NCBI-GeneID:
112219544
NCBI-ProteinID:
XP_024236643
LinkDB
All DBs
Position
LG02:complement(21713765..21726041)
Genome browser
AA seq
901 aa
AA seq
DB search
MLMSSRTNGDLLKRLQKQGLECKGGVIISNTWSQGSAMDASSSESDSSARHGQGKTVAVS
ASIITPLPNHGGKVASSATQTLNGGSLMNCHNSGSAVSLTGTPLSSSCTSSGNASVAVTV
VNNGPGLSKGHSSAVMPPSLNTTIIQTSFVNSQNVVTSSHAASLGTGPAISHIVRPSMQT
AGSGTAMNGPNAGLPFDCLNNGQSPTSVAVSAGSHIIMAEAPKTSIQTASCAVTNPSFQS
APRASTPVTVAASPGGSRSIAQQVLAPRHPQTSPNQPNVQNIQLPPGMVLVRSESGQLLM
IHQQTLAQMQSQSQGVMAPRPATPTSTPPFQITSVQAPGTPILTRQVTPTTIIKQGSPVP
TSAPVTTTLQKPPVTTTLQRPPVLQSPMIVVGAAAGTSMGTALPGATQRTVTASPGTTVT
LATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKDLVKDLLEGKIEVEDFTNRLYRE
LNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQHSGLQQQASATTPTTVVLDSPALRPAAP
TIRPHLQPVISKQGLTTPMVLQPRQQGAMVRPLQMTPMVTLRGPPPHSHIMLGQPQVQLK
QLQTVPVVNPGVLTGSKSSPGAASLATVVQKNKLKEAGGTFRSAMDDDDINDVASMAGVN
LSEESARILATNSELVGAVTRSCKDEAFLHTSTLTRRILEIGKKFGVSDLGPEVVNYVSH
ASQTRLQNLLEKVSEVAQQRNINFKEDSRYEQTSDMRAQIKFFEQLDQMEKQRKEEQERE
ILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELFQLRQKEANLTALAAIGPRKKRKMEAAA
AAAGAEGSGSSPAASGSGSSGASRQFIRQRITRVNLRDLLFCLENERDTSDSHLLYKGFL
K
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgtccagcagaacaaacggggacttgctcaagaggttgcaaaagcaggggctg
gagtgcaaagggggtgtcattattagtaatacgtggtcccagggttcagctatggatgcc
tcatcgagtgagtcggactcatcggcacgacacggccaaggaaagactgttgctgtcagt
gccagtataataactcctctcccaaaccacggggggaaagtagcctcttccgcaactcaa
actttgaatggaggcagtttaatgaactgtcacaattcaggaagcgctgtctctctcact
gggacaccgctgtcaagtagttgcacgagtagcggcaatgcctcggtagctgtcacagtt
gtcaacaacggtccggggttgtcaaaaggacattcgagcgcagtaatgccaccttcattg
aacaccactatcatccagacatcattcgtgaactctcagaatgttgtcacctcgtctcac
gctgcgagtctgggcactggacctgccatatcacatattgtgaggccatctatgcaaact
gcgggatcgggtacagcgatgaatggtcctaatgcgggattgcctttcgattgcctgaac
aatggtcagtcacccacgtctgtggctgtcagtgcggggtcgcacataatcatggcagag
gcgcccaaaacaagcatacagactgcttcatgtgctgtaacgaacccgtcgttccagagc
gcaccgagggcttccactccggtgacagtggctgcgagcccgggagggagccgttctatc
gcgcaacaggtgttggcgcctcggcacccccagacatccccgaaccagcccaacgttcag
aacatccagcttcccccaggtatggtcctggtgcgcagtgagagtgggcagctgttgatg
atccaccagcagaccctggctcagatgcagtcccaatcccagggagtcatggccccccgc
ccagccacccccaccagcactcctcctttccagatcacctcagtccaggctcctggaacg
cccatcctcactaggcaggtgactcccaccactatcatcaagcagggctcacctgtgcca
acctctgctcctgtcaccaccacactccagaaacctcctgtcaccaccacactccagagg
cctcctgtcctacagagtcccatgattgtggtaggggctgctgcaggcacttctatgggg
acagcgctaccaggggccacccagaggaccgtcaccgcatcacctgggaccactgtcacc
ttggcaacggagacgatggagaatgtgaagaaatgcaagaacttcctgtctacattaatc
aagctggcgtccagcgggaagcagtcctcagagactgccgccaacgttaaagacctggtc
aaagatctcctggaagggaagattgaagtcgaggacttcaccaacaggttatacagagag
ctcaactcctcacctcagccttacctcgtgcctttcctcaagaggagccttcctgctctg
cggcagctcaccccagactcagcagccttcatccagcacagtgggctccagcagcaggcc
tctgccaccacccccaccactgtggtactggacagcccagccctgcgccctgcagcccca
accatcagaccacacctccagcctgtcatcagcaaacaggggctgactaccccaatggtg
ctccagcctcgacagcagggggcaatggtaaggcctcttcagatgacccccatggtgacc
ctcagaggtccgcccccccacagtcacatcatgctgggacagccacaggtgcagctcaaa
cagctacagacagtccctgtagtgaatcctggagtgttgactggatctaagtcgtctcct
ggtgctgcctctctggccactgtagttcagaagaacaagctgaaggaagctgggggcacg
ttcaggtcagctatggatgacgatgacatcaatgatgtggcatctatggctggggttaac
ctgtctgaggagagtgcccgtatcctggcaaccaactccgagctggtgggagcggtgaca
cggtcctgtaaggacgaggccttcctccatacctccacactgaccagaagaatactggaa
ataggtaagaagtttggtgtgagtgatctggggccggaggtagtgaactacgtgtcccac
gcctcccagaccaggctgcagaacctgttggagaaagtctctgaggtggcccagcagagg
aacatcaacttcaaggaggacagtcggtacgagcagacgagcgacatgcgtgcccagatc
aagttctttgagcagctggatcagatggagaaacagaggaaagaggagcaggagagagag
attctgatgaaggcagcaaagtctcgttctcgtcaagaagaccctgagcagctgcggttg
aaacagaaggccaaagagatgcagcagcaggagctgtttcagttgagacagaaggaagct
aacctgacggcgctggcagccatcggccctaggaagaagaggaaaatggaggctgcagcc
gctgcagctggagctgagggctcagggtccagtcccgctgcgtctggtagtggtagttca
ggagcatccagacagtttatccgccagcgcatcactcgtgtcaacctcagggacctgctc
ttctgtttggagaatgagagagacaccagtgactcccatctcctctacaaaggcttcctc
aaatag
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