Oncorhynchus tshawytscha (Chinook salmon): 112219555
Help
Entry
112219555 CDS
T05605
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112219555
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112219555
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112219555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Fibulin_C
DUF6479
DUF4064
Stevor
DUF5385
Motif
Other DBs
NCBI-GeneID:
112219555
NCBI-ProteinID:
XP_024236665
LinkDB
All DBs
Position
LG02:21351512..21693625
Genome browser
AA seq
926 aa
AA seq
DB search
MNFVSVVILTCILLVETSWGTKAGQSPKPPCRPGFSESFYTVFVSRDLLRGQSILKDTSL
SSERVKFEDCQHSKAVGFESSDPNFSVRPDGSVYAEQEVANLSEPIQFMVTARGGHDPHI
WETTVKLALFGHQPSVPVSQIGVADMIARAWDSNPRVIKFPRKHQKSSSANGLRRQKRDW
VIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFV
TRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSK
PGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTMAAGLDREK
VSQYIIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENSVNVVVA
NLTVIDRDQPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLT
VIVSNKAPLASGIQSSLQSSAGVTISVQDVNESPVFPTNPKSIRFEEGVPAGTTLTVFAA
QDPDLFIQQTVRYSKLSDPANWLRINRTNGQITTMAVLDRESMYVRNNIYEATFLAADNG
SPPASGTGTLQIHLIDVNDNAPVMMPKEAQLCERANPRSKVNITASDADADPHVGPFVFE
LPSYPPSIRRNWTISRISGDYAQLRLRIPYLDAEVYDVPIIVSDSGNPPLSNRSIIKVKV
CPCDDNGDCTTTGAVAAAGLGTGAIIAILICIIILLILVLVFVMWMKRREKERQAKPLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESVEHIISKPVGVRRVDERPIIAESQY
PVRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGD
QDYDYLNDWGPRFKKLADLYGGGEDD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgtatcggttgttatactgacgtgcatcttacttgtggaaacatcttggggg
accaaggcaggccaaagtcctaaacccccatgcagaccaggcttctctgagagcttctac
actgtgtttgtctcgagggatctactgcgaggccaaagcattctcaaagacaccagccta
tcgagtgaacgtgtaaagtttgaggactgccagcacagtaaagcagtgggcttcgagagc
agtgaccctaacttcagtgtgcgccctgacggctcagtgtacgcggagcaggaagtggcc
aacctgtcagaaccgatccagttcatggtgaccgcccgcggaggtcatgaccctcacatc
tgggagaccacggtcaagttggccttgtttggacaccagccctctgtccctgtgagtcag
attggagtggcggatatgattgcaagggcctgggactctaatcccagggttatcaagttt
ccacggaaacatcaaaaaagctcctctgccaatggactgagacgacagaagcgggactgg
gtcatcccaccaatcaatgtgcctgaaaactccagaggacccttcccacaaatgcttgtc
agaatccgctcggaccaggacctggagaaagggatacgctacagcatcactggagcaggg
gcggaccagcctcccattgacgtgtacaacatcgaccctgtgcacggcaagatgtttgtc
accagacccctggacagagaggagagggcctcctaccatctgcgggcccatgctgtggac
atgaatgggaacaaggtggaaagccccatagacctatacatctacgtcatcgacatgaat
gacaaccggccagagttccagaaccaggtctacaatggctctgtggctgaaggctcaaag
ccaggcacgttggtgatgcaagtgacagccaacgactcagatgatgacaccacagccaat
gggatggtgcgctaccggatcctgtcccagaccccccacatgcccatccccaacatgttc
accatcaacagtgagacgggagacatcttcaccatggctgctggcctggacagggagaaa
gtgtcccagtacatcatcatcgtccaggccacggatatggaggggaacctgaactttggc
ctgtccaacacggccaccgccctcatctctgtgaccgacatcaacgacaatcctcccgag
ctgaccgccaggacgttttcgggggaggtcccagagaacagtgtgaatgtggtggtggcc
aacctgacagtgattgacagggatcagccccacagccctaactgggctgcccagtaccgc
atcgccagcggagacccccagggtcacttcctcatccgcaccaaccctgtcaacaacgac
ggcatggtcactgtggtcaagccggtggactatgagcagaacagggccttcatgctgact
gtgatagtctctaacaaggcccccctggccagtgggatccagtcttctctccagtcttca
gcgggggtcaccatctccgtacaggacgtcaacgaatcccctgtcttcccaaccaacccc
aagtccatccgttttgaggagggtgtccctgcaggcaccacactcaccgtgtttgctgcc
caagaccctgacctcttcatccagcaaactgtcaggtactccaagttgtctgaccccgct
aactggctgaggatcaacaggaccaatggtcagatcaccaccatggctgtgctggacagg
gagtctatgtacgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggt
tctcccccggccagtggaacaggtactctgcagatccatctgatagatgtgaatgacaat
gctccggtgatgatgcccaaggaggcccagttgtgtgaacgagccaatccccgctccaag
gtcaacatcacagcctccgatgccgacgctgacccccatgtggggccatttgtgtttgag
ctgccctcctacccccccagcatccgacgcaactggaccatctcccggatcagcggtgac
tatgcccagttgagactgaggattccctacctggatgcagaggtgtatgatgttcccatc
atcgtgtcggactccggtaacccgcccctctctaacaggtccattataaaggtcaaggtg
tgtccgtgtgatgacaacggagactgtactaccaccggagctgtggctgctgccggactg
gggaccggggccatcatagccatactcatctgtatcatcatactgcttatccttgtgcta
gtgtttgtgatgtggatgaagcgcagggagaaggagcgtcaggccaagcccctgctgatc
gacccagaggacgacgtcagagacaacattctgaagtacgacgaggagggaggaggagag
gaggaccaggactatgacctgagccagctgcagcagcctgagtctgtggagcacataatc
agtaaaccagtgggggtgcgcagggtggacgagaggcccatcatcgctgagtcccagtac
cctgtcagacccagcctgccccaccctggagacatcggagacttcataaacgacggtctg
agggcggcggacaacgaccccacggccccgccctatgactccctgctggtgtttgactat
gagggcagtggctccacggccggctctgtcagctccctcaactcctctagctcaggagac
caggactacgactacctcaacgactggggcccccgcttcaagaagctggcagacctctac
ggcgggggagaggacgactga
DBGET
integrated database retrieval system
