Oncorhynchus tshawytscha (Chinook salmon): 112219608
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Entry
112219608 CDS
T05605
Symbol
rad23b
Name
(RefSeq) UV excision repair protein RAD23 homolog B isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112219608 (rad23b)
09124 Replication and repair
03420 Nucleotide excision repair
112219608 (rad23b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
otw03051
]
112219608 (rad23b)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112219608 (rad23b)
Proteasome [BR:
otw03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
112219608 (rad23b)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
112219608 (rad23b)
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Ortholog
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GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
Dsc3_N
Ubiquitin_5
Ubiquitin_4
CUE
Motif
Other DBs
NCBI-GeneID:
112219608
NCBI-ProteinID:
XP_024236748
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Position
LG20:5729704..5752629
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AA seq
388 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVAKPKAAPAAAQPSSATTTTTSSTTVPTVPAAALSGSDNPPEGGKPE
DKPAEERPSNTSAPASTPTSSSGLLANVNMFEEATSALVTGQSYENMVTEMMLMGYEREQ
VVASLRASFNNPDRAVEYLLTGIPAGEEGHVSADPVVPPVGGGTPALNTGSMTTPASTGS
LASAATGANPLGFLVNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFI
QMLNEPAQEGGQGGGGGGVGGGGVGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEG
LVIQAYFACEKNENLAANFLLQQNFDDD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcagataacattaaaaactctccaacagcagacatttaaaatcgacatagacgcagag
gagacggtaaaaaccttaaaggaaaaaattgagaatgagaagggaaaagatggttttccg
gttgctggacaaaagttgatatatgcagggaaaatcctaaatgatgacacagccctcaag
gagtataagattgatgagaagaactttgtggtcgtcatggtggcaaagcctaaagcagcc
ccagcagctgcccagccttccagtgctaccacgaccaccacctccagcactacagtcccc
acagtacccgctgctgccttgtcaggctcagataacccacccgaggggggtaaaccagag
gacaaaccagctgaggagaggccctccaacacctcagccccagcatcaactccaaccagt
tcgtctggtctcttggccaatgtgaacatgttcgaggaggcaacttctgctctagtgaca
ggccaatcatatgagaacatggtgaccgagatgatgctgatgggctatgagagggagcag
gtggtggcatcactccgagccagcttcaacaacccagacagagctgtggagtacctgctt
acagggatcccagctggggaggagggccatgtgagtgctgacccagtggtgccccctgtg
ggtggaggaactccagctctgaacacaggcagtatgaccaccccagccagcacaggctcc
ctagccagcgctgcaacaggagccaaccctctggggttcctggttaaccagccccagttt
ctccagatgagacagatcatccagcagaacccctctctgctccctgccttactacagcag
atagggagggagaacccccagcttctgcaacaaatcagcagccaccaagagcagttcatc
cagatgctgaacgagccagcccaggaggggggtcagggaggaggaggaggaggagtaggt
ggtggaggtgttggagtgggggtcggtggggaggctggaagtggcatgaactatattcag
gtcacaccccaggagaaggaggccattgagaggctaaaagccctaggattccctgaagga
cttgttatacaggcctactttgcctgtgagaagaatgagaacttggctgctaacttcctt
ttacaacagaactttgacgacgactga
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