Oncorhynchus tshawytscha (Chinook salmon): 112219621
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Entry
112219621 CDS
T05605
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112219621 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112219621 (nup54)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112219621 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
DUF5568
Motif
Other DBs
NCBI-GeneID:
112219621
NCBI-ProteinID:
XP_024236800
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All DBs
Position
LG20:complement(6949398..6969722)
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AA seq
534 aa
AA seq
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MAFNFGGAATNPATGLAAPGFGTTTTAAAPAGFGGFGTTTTGFGGLGAGSTTSGAFGGFG
TTTTSAAAPGSTFSFAAPASTTGGLFGNTQNKGFGFSSGLGTGTTAAAGFGTSLGTTLGG
GFGGFNIQPQQQQQGSFFGQQAQAPAQSNQLVHTANALSAPTLLGDERDAILAKWNQLQA
FWGTGKGYFNNQLPPVDFTQENPFCRFKAVGYSCIPGSKDEDGLVVLAFNKKEADVRSQQ
QQLVESLHKVLGGNQTLTVNVEGVKALPDDQTEVVIYVVERSPNGTSKRIPATTLYSYVE
QANTKAQLTQLAVFMSVTRTELSPAQLKQLLANAPAGVDPIIWEQAKVDNPDADKLIPVP
MVGFKELLRRLKIQDQMTKQHQSRVDIISNDISELQKNQATTVAKIAQYKRKLMDLSHRV
LQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQCELNAPTQFKGRLNELMSQIRMQNHFGT
VRSEERYSVDGDLLREIRQHLKQQQEGLSQLISVIKDDVEDIKLIEHGLLDRLG
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaactttggcggcgctgccaccaaccctgcaacaggtcttgcagcccctggt
ttcgggaccaccaccactgctgcggcccctgctggcttcggcggctttggcaccaccacc
acaggatttggggggctaggagccgggagcaccacgtctggtgcttttgggggttttggg
acaaccactacatccgctgctgcgcctgggtcaactttcagctttgccgctcctgcaagc
acaacaggaggactgtttggtaatacacagaataagggatttgggttctcctctgggctg
ggcactggcactactgctgcagctgggtttggaacaagtctggggacaactctaggaggt
ggatttggtggcttcaatatccagccacagcagcaacagcaaggaagcttttttgggcag
caggcccaggccccggcccagtctaatcagctcgtccacacagctaacgccctgtctgcc
cccaccctgcttggggacgagagagatgccatcttggccaagtggaatcagctccaggcc
ttctggggaacaggcaagggctatttcaacaaccaactcccccctgtagacttcacacag
gagaaccctttctgcaggttcaaggcggtgggctacagctgtatcccaggcagtaaggat
gaggatggtctggttgtcctggccttcaataagaaggaggctgatgttcgtagccaacag
cagcagctggttgagtctctacacaaggtgctgggagggaaccagactctcaccgtcaac
gtagagggagtcaaagccctgcctgatgaccagacggaggtggtgatctatgtggtggag
cgttctcctaacggcacatctaagaggatcccagctacaacactgtacagctatgtagag
caggctaacaccaaggcccagctcacacagctagcagttttcatgtctgttacacgcact
gagctctcaccagcacagctcaaacagctgctggcgaatgcaccagcaggtgtggatccc
atcatttgggaacaggcaaaggtggataaccctgatgcggacaagttgatccccgtcccc
atggttggtttcaaagaactactccgcagactgaagattcaggaccagatgaccaaacag
caccagtccagagtagacatcatctctaatgacatcagtgaactgcagaagaaccaggca
acaacagtggctaagatcgctcaatacaagaggaagctgatggatctctctcacagagta
ctacaggtgctgatcaagcaggagattcagaggaagagtggctatgccatccaggtggat
gaagagcacctaagagtgcagctggacaccatccagtgtgaactcaatgcccccacgcag
ttcaagggccgtctgaatgagctgatgtctcagatccggatgcagaaccactttgggacg
gtgcgctcagaggaacgatatagtgtggacggagaccttctcagagagatcagacagcac
ctgaagcagcagcaggagggtctgagtcagctgatcagtgtgatcaaagatgacgtggaa
gacatcaaactgatagaacatggcctcctggacagactcggctga
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