Oncorhynchus tshawytscha (Chinook salmon): 112219672
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Entry
112219672 CDS
T05605
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112219672
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
112219672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
112219672
NCBI-ProteinID:
XP_042158028
LinkDB
All DBs
Position
LG20:5126878..5204143
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AA seq
1444 aa
AA seq
DB search
MYFLTGWPRRLLCPLKSEEEPFHIHPNSQRFYFAVLSETQLSIWFSRPSVLIVSYIESVK
AAAQFGFYQQAEWKPDDSMIAVAAANGYILMFDVVGGGEDKYLYEPVYPKGSPRVKVTPG
YKEEQCAPALSLEMKRPIDLEAPITSIKSLQEDLLVSTADGYLHILHWDGVSNGRKAISL
CTVPFSLDLQSARGGPSLDLEGLYIRDMEYCVTLDGFAVVLDDGRLGFISPVASRFTAEQ
LQGVWAADVTDGTCVAVNNKYRLMAFGCASGSVLVYMIDTTTGSMQLSHKLELTPKHFPD
VWNKTGAVKLIRWSPDYSVAMVTWECGGLSLWSVFGAHLICTLGEDFAYRSDGTKKDPIK
ISSMCWGVEGYHLWVITSREEAELVENIEGAPPPTQTKQAGILQFHFIKSALTVNPCTSN
QEQVLLHGEDRLYLTCGDPTQVPSSSSDGPNTPHPHNLAHGLEGSPLHHRSAPSPNSISQ
GLSTLLGHKHWHVVQIHSTYLESNWPIRFAAIDTAGQCIAVAGRRGFAHYSMSTRKWKLF
GNITQEQNMTVTGGLAWWNDFVVVACYNFTDRQEELRLYLRSSNLDNAFASVTKLHSDTL
LLNVFRDLIVLFRADCSIFLYSIERRHDGPNPSACVELLQEVSMSRYIPHPALVVSVTLT
SVRTETGITLKAPQQACMAESIMLNLAGQLIMLQRDRSGPQVREKEDQKKLLPFCPPVVL
AQCVENVWTTCRSNRKKRHLLEALWLSCGEAGMKVWLPLFPRDHRKPHSFLSRRIMLPFH
INIYPLAVLFEDALVLGASNETVLYDGLQGPREGREPLEVTFPYCTVERTSQIYLHHILR
QLLVRNLGEQALLLAQSCAALPYFPHVMELMVHVVLEEEATSREPIPDPLLPTVAKFITE
FPLFLQTIVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPA
VSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGEMETPPPTPTTQEPSSTGGFEFFRN
RSISLSQSADGIAAGKFNLQKTFSMPSGPSTKGSERWNKDSDCAENMYIDMMLWRHARHL
LEQVRLKDLGCFSAQLGFELIGWLCRERTRVARLDDFVMALKCLHKDFLWPFPVIPACST
SSPFKDGHRKTVLSQRLLKSQSADSLLNSDMDTAPPQASARNSNHTWLDGLGALGPEPKE
MNTSSSHGGPQTQEAFLSPLTNKTEECSIGSATDLTETSSVVDGDWTMVDENFSALSLTQ
SELEHISMELANKGPHKSQVQLRYLLHVFMEAGCLEWCVVIGLILREATVIKQVVNFLDS
PEVPPETVQSIRSGLLGVDAWASTDCLGYKPFLNLIRPQLQKLMETAVEQVQPEAFQPGA
SNPNSKLTEPQPGCPRAEDSRGPAPLGLALPSEPPGGLVTEDGGAPEEQEEQAADEGAYD
CTLS
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgtattttttaactggctggccccggaggctactttgtccactgaaaagtgaagaggaa
ccgtttcatattcatcccaactcacagaggttttacttcgctgtgttgtcagagactcaa
ctaagcatctggtttagtcggcctagtgttctgatagtgagctacatagagtcagtgaag
gcagcagctcagtttggcttctatcagcaggccgaatggaagccggacgattccatgata
gcagtggcggctgctaatggctacatcctcatgtttgacgtggtgggaggaggagaggac
aagtatctttatgagccagtctatcccaaagggagtccacgtgtcaaggtcaccccaggt
tataaagaagagcagtgtgcccccgctctcagcctggagatgaagagacccatagatctg
gaggctcccatcaccagtattaagtctcttcaggaggacttgttggtgtctacagctgat
ggctacctccacatcctccactgggacggagtcagcaatggccggaaggctatcagtctc
tgcaccgtccccttctccctggaccttcagtcagcacgcggtggtccgtctctggatctg
gaggggctgtacatcagagacatggagtactgcgtgactctggatggctttgctgtggtg
cttgacgacgggaggctgggattcatcagtcctgtagccagcaggtttaccgcggaacag
ctgcagggcgtctgggcagctgacgtaacagacggaacatgtgtggcggtcaacaataag
tacaggctgatggcgtttggttgtgccagtggctcagtattggtgtacatgattgacacc
accacaggatccatgcagctctcccacaagctggagctcaccccgaaacacttccctgac
gtgtggaacaagaccggcgcggtgaagctgatccgctggtcccccgactacagcgttgcc
atggtgacctgggagtgcggcgggctgtctttatggagtgtgttcggagcacacctcatc
tgtacactcggggaggactttgcgtatcggtcagacggcacgaagaaggatcctataaag
atcagctctatgtgctggggagtggaaggttaccacctgtgggtcatcaccagtagagag
gaagcagagcttgtagagaacattgagggggctccacctcctacccagaccaagcaggcg
ggcatactgcagttccacttcatcaaaagcgccctcaccgttaacccctgcacgagtaac
caggagcaggttttactacacggggaagaccgtctgtacctgacctgtggtgaccccacc
caggtcccatccagcagctccgatggccctaacacccctcacccccataacctcgcccat
ggcctggagggcagcccccttcaccatcgctccgccccctcacccaactccatctctcag
ggactcagcactttactgggacacaagcactggcacgtggtccagattcacagcacatac
ctagagagtaattggcctatacggtttgcagccatagacacagcaggccagtgcatagcg
gtggcagggagacgtggctttgcacattactccatgtccaccaggaaatggaagctgttt
gggaacatcactcaggagcagaacatgaccgtgacaggggggctggcctggtggaacgac
tttgtcgttgttgcctgttacaatttcaccgaccggcaagaagagctgcgtctgtacctc
cggtcgtccaacctggacaatgccttcgcctccgtcaccaagctgcactctgacaccctg
ctgctcaatgtgttcagagacctgatcgtcctcttcagagcagactgctccatcttcctc
tacagcatcgagaggaggcacgacgggcccaacccgtcagcctgtgttgagctgcttcag
gaggtgtccatgtcccgctacatcccccatcctgccctggtggtgtctgtcaccctcacc
tcggtgcgcacagagaccggcatcacgcttaaagccccacagcaggcctgtatggcagag
agcatcatgctgaacctggctggccaactcatcatgctacagagagaccgttctggacca
caggtacgagagaaggaagaccagaagaaactgctgccgttctgtcctcccgtggttctg
gctcagtgtgtcgagaatgtgtggacgacgtgtcgtagtaacaggaagaagcgccacctg
ctggaggctctgtggctgtcctgtggcgaggccggaatgaaggtgtggctgcccctgttc
ccgcgggaccaccgtaagccccactcgttcctgtcccggcgcatcatgctccccttccac
atcaacatctaccccctggccgtgttgtttgaagatgccctggtgctgggggcatctaat
gagaccgtgctctatgacggcctgcagggtcccagagagggccgggagcctcttgaggtg
acgttcccttactgcacggtggagaggacctcccagatctacctccaccacatcctgcgc
cagctactcgtgcgtaacctgggagagcaggccctgctcctggcccagtcctgcgcggcg
ctcccctacttcccccacgtcatggagctcatggtccacgtggtgctggaggaggaggcc
acctcccgggagcccatccccgacccgctgctgcccaccgtggccaaattcatcaccgag
ttccccctgttcctccagaccatcgtgcactgcgccaggaagacggagtacgccctgtgg
aactacctgtttgctgccgtgggcaaccccaaggatctgtttgaggaatgtctaatggct
caggacctggacacagcagcatcctatctcatcatactgcagaacatggaggttccggcg
gtgagcaggcagcacgctacgctgctcttcaacacggctctggagcagggcaagtgggac
ctctgtcgtcacatgatccgattcctcaaggccattggctctggggagatggagaccccg
cctccaacaccaaccactcaggaacccagttcgacgggaggcttcgagttcttcaggaac
cgcagcatcagtctgtcccagtcagctgacggcatcgctgctgggaagtttaaccttcag
aagacctttagcatgccctccgggccctccactaaagggtctgagcgatggaataaggac
agtgactgtgctgagaacatgtacatagacatgatgttatggcgtcacgcccgccacctg
ctggagcaggtccgcctcaaagacctaggctgtttctctgcccagctgggcttcgagctg
attggctggctgtgccgcgagcgcacccgggtagcgcggctcgatgactttgtcatggcg
ctgaagtgtctccacaaggacttcctctggccgtttcctgtcatcccagcgtgctcgacc
agctcgcccttcaaggacggacaccgcaagacggtgctgagccagcggctgctaaagtcc
cagtcagcagacagcctgttgaacagtgacatggacacagcgcccccgcaggcctcagca
cgcaacagcaaccacacctggctggacggtctcggggcgctgggaccggagcctaaagag
atgaacacatcctcttcccacggggggccacagacacaggaggccttcctctctccactc
actaacaaaacggaggagtgcagtatcggttcggccacagacctgacagagaccagcagc
gtggtggatggagactggaccatggtggatgagaacttctctgctctgagtctgacccag
tctgagctggaacacatctccatggagctggctaacaaggggcctcacaagtctcaggtc
cagctacgctacctgctgcatgtgttcatggaggcgggctgtctggagtggtgtgttgtg
attggtctgatcctgagagaggccacggtcatcaagcaggtggtcaacttcctggacagc
ccagaggttcctcctgagaccgtccaaagtatccgctccggcctgctgggagtcgatgcg
tgggcctccacagactgcctgggctataaacccttcttgaacctgatccggccccagctg
cagaagctaatggagactgctgtggagcaggtccagcctgaagccttccagccaggggct
tccaaccccaactccaagctgactgagccccagcccggatgccccagggcggaggacagt
agagggcctgctcctttgggcctggccctgccctcggagccccctggagggttagtgaca
gaggacggaggagctccagaggagcaggaggagcaggcggcggacgagggggcgtatgac
tgcaccttgtcctga
DBGET
integrated database retrieval system
