Oncorhynchus tshawytscha (Chinook salmon): 112219677
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Entry
112219677 CDS
T05605
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112219677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112219677
03041 Spliceosome [BR:
otw03041
]
112219677
03009 Ribosome biogenesis [BR:
otw03009
]
112219677
03016 Transfer RNA biogenesis [BR:
otw03016
]
112219677
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112219677
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112219677
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112219677
Complex C
U4/U6.U5 tri-SnRNP related factors
112219677
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112219677
Transfer RNA biogenesis [BR:
otw03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112219677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112219677
NCBI-ProteinID:
XP_024236922
LinkDB
All DBs
Position
LG20:complement(3054311..3106952)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKRKLAVPEKGKSTSKNGKGGKAEFYAAKSKREADDNGTD
EVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEEYKQLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHRQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDPKGRKG
GTRGLSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEVMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEDFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKKTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFIFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaggaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
ggaaaggctgagttctatgcagccaagagtaagcgggaagcagacgacaacgggacagat
gaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatcaatctt
gccgactgcatgcccaaggtgagggtggagccggttgagacagtggaaggatgcaaccac
gaggtggccctaccagccaatgaggagtacaaacagcttaagcctcgtgtgggtaaagca
gccaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgtatcgac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgactactgaaatcctg
aggagcatgttgtaccgggggtcagaggtcatgagagaggtggcctgggtcatcttcgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
cttcctgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaagcagttc
gctgaatggatctgccacctccacagacagccctgtcacgtggtgtacactgacttccgg
cccacacccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgactctggaggcagcagcggagggggcaaatgggaccccaaggggcgcaaagga
gggacccgagggctgtccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagccggtcatcatcttcagcttcagtaagaaggagtgtgaggcctacgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtcagacgatgacaagaagctgccccaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactcctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggcttctcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgaactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggtggatgagaagatgagccctgca
attgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccacctcacc
tacaacatggttctcaacttgctgcgggtggaggagatcaacccggagtacatgctagag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagtgatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggacttcatccacaaa
ccaaaatactgtcttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttgggtggggtgtggttgttaatttctcgaagaagtcaaatgtcaaggccata
acgggtgacgcagaccctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaaaaccgccacagaggctgccaaacccgctgccgctggggagaagggggaaatg
caggtggttcctgtgatgctccacctcctgacctcaatcagttcagttcgtctctacagc
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcgtttgaacacaggatgtactcc
caccccatgcactctgaccctagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgcgacttcc
tctgatgtcatcgaaatgaagggccgagtggcctgtgagatcagcagtgctgatgagctt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtcagcagaacaggttact
gctctcctcagcgtcttcatcttccaggagaacgttaacgagatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggatgaggacacctacctggacaagttcaagcctcacctg
atggacgtggtttacacctgggctaacggctccaccttcgcacagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
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