Oncorhynchus tshawytscha (Chinook salmon): 112219685
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Entry
112219685 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-2
KO
K06481
integrin alpha 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03271
Virion - Rotavirus
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
112219685
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112219685
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112219685
09144 Cellular community - eukaryotes
04510 Focal adhesion
112219685
09142 Cell motility
04820 Cytoskeleton in muscle cells
112219685
04810 Regulation of actin cytoskeleton
112219685
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112219685
04515 Cell adhesion molecules [BR:
otw04515
]
112219685
04090 CD molecules [BR:
otw04090
]
112219685
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112219685
Exosomal proteins of bladder cancer cells
112219685
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin alpha subunits
112219685
CD molecules [BR:
otw04090
]
Proteins
112219685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Integrin_A_Ig_2
FG-GAP
Integrin_A_Ig_3
Integrin_A_Ig_1
FG-GAP_3
FG-GAP_2
ITGAX-like_Ig_3
Integrin_alpha
Cytadhesin_P30
TM_ErbB1
FN3_IL27B_N
Motif
Other DBs
NCBI-GeneID:
112219685
NCBI-ProteinID:
XP_042157997
LinkDB
All DBs
Position
LG20:3297988..3334751
Genome browser
AA seq
1188 aa
AA seq
DB search
MELNPKRTVLTLLLIQCWSIPRSLSFNVGTAGAKVFSGPALEEFGYTVKQFRNHQGKWLL
VGSPWSGYNQDRKGDIYKCEIRGSSSGCQRLNLQNSVSMSTVKNINVNMSLGLTLTHTAT
EDKFMTCGPLWAQKCGSQYYYPGICAEVNPLFNPLSSFSPALQTCGGPMDIAIIVDGSNS
IYPWPPIVAFLKKLLENLDIGPDNTQASIIQYGVEPVVEFHLNAYKTKDSIIAAAANILQ
REGLETNTFRAIEFARQNAFLPGNGARPGASKVMVVVTDGESHDKNLRDDVIRKCESEKI
TRFGIAVLGYYIRNDIDTKNLIAEIKSIASTPTDRYFFNVSAEEALLEIAGSLGDRIFNI
EGTGKGGDFQMEMSQVGFSAHQTKKQNMIMLGAVGAYGWSGTVVHYTTQKSDIFPKTAFE
RILEDRNHSSLLGKXACNHLRVNIVSFIFYVARSNHTGQVIVYIINGKGQPTVIDSQRGD
QIGSYYGSVLCPLDVDKDGVSDLLLVGAPMFMNEQQKEIGKVHLLSFTKGILSVQGFLKG
PSPVENARFGMSVSAVPDLNMDGYSDVVVGAPLEDNNKGVIYVFNGDKKRLRTQYSQKIL
GSKLDPALQYFGRSMDASSDLNDDTIPDVSVGAYGMVVQLWSRGMAVVTARATFNPDTVS
ILSKTCRVSGRLVSCFNTSVCFSATFRPKIPVGPVAIRFNLTLDAELQSSRVTSRGQFRN
SERVLQKDIRVSTREVCETLEVFVQEAPDFVSSIGLRVDITLQDPDSSPVLDVLSPTAWE
FFIPFSKDCGSDDVCLSDLLLKLKKGEMIPSSSRMLVSFKDKRLSFTVSVTNKKENAYNT
QVTATYSKNLFFASISPPSDGTEVKCTSTKESLTLSCQVGYPALRQNQEVTFGINFDFNL
NQLQTEADVSFEALSDSTEANPSDNQASISVPVHYDSEISLSREANLNFYVVDMDNEAKT
AVNTFNDIGPEFKFSLKVSTGNFPVSLAYLTVSLPSATARGNPLLYVTGVKTEPAGEVSC
EVTSLVNPLKISEKPYTASFSKENLMGTEDLNCKTAKCQPMKCVLKDMGIKSDFFVNVTT
RIWNGTFAASSFQSTVLTVSTEIETSEPELLVVSHKHLTVGVTISKPGVKGEVPVGVIAG
SVIGGLLLLALVIGLLWKFGFFRRKYKQLMQNTEEDDAETEGLENTAE
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggagttgaatccaaagaggactgttttgacgttgcttttgatccaatgttggagcatc
ccccggtccctatcctttaatgtggggacggcaggagccaaggtattctctggacctgca
ctcgaggagtttggatacaccgtgaaacagttcagaaatcaccagggaaaatggttgctg
gttggttctccctggagtggatacaaccaggacaggaaaggagacatctacaagtgtgag
atcagagggtccagttcaggctgccagagactcaacctgcagaactcagtcagcatgtca
acagtgaagaacatcaatgtcaacatgagtctggggctaaccctcacccacacagctaca
gaagataagttcatgacatgtggacccctgtgggctcagaagtgtggcagccagtattat
tacccagggatctgtgcagaagtgaaccctctcttcaaccccctgtcttcgttctcaccc
gcccttcaaacttgtgggggtccaatggatattgctattattgtggatggatccaacagt
atatatccctggccacccattgtggctttcctcaagaaactgttggagaatttagatatt
ggaccagataatactcaggcaagtattatacagtacggggttgagccagtcgttgaattc
catctgaacgcctacaaaaccaaagactcgatcattgcggctgcagccaacattctacag
agggaaggcctggagacaaacaccttccgcgccattgaatttgctcgacagaacgcgttc
ctgcccgggaacggagctcgacccggagccagcaaagtgatggtggtggtgacggacgga
gagtctcacgacaagaacctccgagacgacgtcatcaggaagtgtgagagtgagaagatc
acccgctttggtattgctgtccttgggtattacataagaaatgacattgacactaagaac
ctgattgcggagatcaagtccatcgccagcaccccgacagataggtatttcttcaacgta
tcagctgaggaggctctgctcgagatcgctggatctctgggagaccgcatcttcaacatt
gagggtactgggaaaggtggtgactttcagatggagatgtcccaagtgggattcagtgcc
caccaaaccaagaagcagaacatgattatgctgggtgcagtgggggcctatggctggagt
ggtactgtggttcactacaccacccagaaatcggacatcttccccaagacggcctttgag
agaattctagaggacagaaaccacagctcactattaggtaagtgagcttgcaatcatcta
cgagtcaatattgtctcctttatcttctatgtggctcggtccaaccacactggacaggtc
atagtgtacatcatcaacggcaagggacaacccaccgtcatcgactcccagaggggagac
cagattggctcctactacggcagcgtactctgtcctctggatgtggataaagatggtgtg
tctgatctactactggttggagctcccatgttcatgaacgaacagcagaaggagattggg
aaagtccatctcctctccttcacaaagggcatcctaagtgttcaggggttcctgaagggt
ccgtccccagtggagaacgctcgttttgggatgtctgtctcagcggtgcctgacctcaac
atggatggctacagtgatgtggtggtgggagccccactggaagacaacaataaaggtgta
atctatgtcttcaacggggacaagaagagactcaggacacagtattcccagaaaatcctg
ggctccaagctggaccctgcgttgcagtacttcgggaggtccatggacgccagctccgac
ttaaacgatgacaccataccagatgtctcagtgggggcttatggaatggtggtccagctc
tggtctcggggtatggccgtggtgacagcgagggcaaccttcaaccctgacacggtcagc
atcctgagtaagacgtgcagggtcagtgggaggctggtgtcctgcttcaacacctcagtc
tgtttcagcgccaccttcaggcccaagatacctgtaggacctgtggctatcaggttcaac
ctgaccctagatgctgagctccagtcgtctcgtgtcacctccagaggtcagttcaggaac
tcagagagagtcctgcagaaagacatccgggtttccaccagggaggtctgtgagacacta
gaggtctttgtccaggaggcccctgactttgtgagctcaatcggtctgcgtgtggacatc
actctgcaggacccagactccagtcctgttctggatgttctcagtcccactgcctgggag
ttctttatcccattctccaaagactgtggctctgacgatgtgtgtttgagtgacctgctc
ttgaagttgaagaaaggagagatgattcccagctcgtctaggatgctggtcagctttaag
gacaagaggctctccttcactgtgtctgtgaccaacaagaaggagaatgcgtacaacacc
caagtcacggccacgtactccaaaaacctcttcttcgcatccatcagtcctccaagtgat
ggaacagaggtaaagtgcacctccaccaaggagtctcttaccctctcatgccaggtgggg
tacccagctttaaggcagaaccaagaggtgacatttggaatcaactttgacttcaacctg
aatcaactgcagaccgaagccgacgtgagctttgaagctctaagtgacagcacagaggcg
aacccgtcagacaaccaagcctctatctccgtccctgtccactatgactcagagatctcc
ctctccagggaagccaatctcaacttctatgtggttgacatggacaatgaagcgaagacc
gcagttaataccttcaatgacatcggtcctgagttcaaattctctctgaaggtctctaca
gggaacttcccagtcagtctggcctacctcacagtctcactgcccagtgctacagcaaga
gggaacccattgctgtatgtgacaggagtcaaaacagaacctgctggcgaagtgagctgt
gaagtaaccagcctcgtcaaccctctgaagatcagtgagaagccttacacagcatccttc
tccaaggagaacctaatgggcacagaggatctgaactgtaagacagccaagtgccagcct
atgaagtgtgtcctgaaagacatggggataaagagcgatttcttcgtgaacgtgaccacg
cggatatggaacggtacctttgctgcttcatccttccagtccactgtgctgactgtgagc
acagagatagagacctccgagcctgaactgctggtcgtctctcacaagcacctgacggtt
ggcgtcaccatcagtaaaccaggggtgaaaggagaggtgcctgtaggcgttattgcgggc
agtgtgattggaggcctgcttctattggctctggtcattggcctgctttggaagtttggc
ttcttccggagaaagtacaagcagctgatgcagaacactgaggaggatgatgcagagacc
gagggactggagaacacagcagagtga
DBGET
integrated database retrieval system
