Oncorhynchus tshawytscha (Chinook salmon): 112219709
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Entry
112219709 CDS
T05605
Symbol
col27a1a
Name
(RefSeq) collagen alpha-1(XXVII) chain A isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112219709 (col27a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112219709 (col27a1a)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112219709 (col27a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112219709
NCBI-ProteinID:
XP_024236985
LinkDB
All DBs
Position
LG20:complement(697117..918251)
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AA seq
1740 aa
AA seq
DB search
MNLGIRRRDCRTSHLDTKRVLLLCTVLYCTCYLGLAQVHSEDVDILQRLGLKGEKPSSSI
RPGIIPFRSGVILTQQARVEAPARSVIPPSYWPNLALLLSVRSHRVNNAFLFTVLTGHRR
LLLGLQLTPGQLVLHTGPKSAVPLHYDLRNGQWHHLALDIRDQRVTLYSACGKQSVHADL
TSVDREGLDPESSFLLGKMGQGSVQFEGAICQFDLIPSSQAAHNYCRYIKKQCREGDTYR
PNIAPLLTRDPNITASLALPAPSELNRKPMVMNLARSATAAASAVRHVVPAILLKPTPRT
TPSPLPGTVMLLMTGPGLAFPTKAQSETITAPLRNGVAPPSYPITQKSPKPTHIKPANVK
PTPVKPANFKPTPAKPILAKPTSRSSNSPKKTTLGLVAKQKPSFTAAAKPTKNNPDSALL
AQGAVSPGPKKLLQKPQPTAPKKTIAQPKVTATRQFKATNAPANPKLSKATDAPVTQRPT
KPTYAPFNFPTTGWWQTYDVEPTHFSLLLPGPQGLKGEPGLAGRPGPPGKSGTPGKRGPQ
GEPGPHGKPGRPGPPGLKGRKGDAGLSSGTAPKGEKGDPGILGQVGLIGQAGGKGQRGHP
GPPGHTGEPGERGPDGSPGAKGYPGRQGLPGPIGAFGPKGTRGFIGIAGLFGLPGADGKR
GILGEPGKRGKMGRPGFPGDFGERGPPGPDGDPGLLGARGPNGVLGLIGDMGPNGKVGLP
GPDGLKGVSGNTGEPGLKGDKGEIGLHGQQGMIGFQGDKGVQGTPGLSGTRGKPGLQGRP
GERGSDGVPGLPGAEGFPGDMGPPGENGLEGPNGKPGVRGLPGPRGVPGLEGDEGPLGPL
GLTGVEGRVGMKGFPGKIGTDGVKGELGITGKVGGMGERGLVGFIGPVGETGLAGEKGDR
GEMGLPGPPGEKGSMGHQGTLGESGPSGEPGRPGPPGSRGPIGTRGPKGRWGARGPDGPT
GKLGLVGMKGPDGLPGKMGFSGEEGKIGELGEVGPQGFPGIQGPSGPLGDQGIAGEPGLP
GPVGTVGPLGETGLQGPLGKMSDPGLPGEPGEKGALGAIGNIGEQGLMGQRGEPGLEGEA
GAAGPDGTKGEKGDMGHEGDKGEKGETGMKGKEGQPGNPGLIGITGQEGKSGKIGERGKP
GRKGAKGHMGHLGETGRIGKTGPKGFVGPKGSRGTIGPVGPPGRMGKQGEMGLAGYEGHQ
GPQGPIGRQGSNGEKGEQGDDGKVEGPTGPPGDRGPPGDRGERGELGDPGYLGQQGVDGG
RGKPGAPGQPGHPGPHAQHGPKGSKGDQGQKGKLGQRGESGSRGSLGVVGLHGPRGMVGR
EGLEGVPGVDGVSGKDGSKGMPGEHGDDGEFGLPGKAGYRGKVGGLGLPGDMGTFGPKGE
RGLPGQTGPSGKRGFKGGMGLPGPQGDQGPKGQPGDTGEPGFPGILGVFGPTGPPGDLGP
KGIQGPKGPQGTMGRGGILGPMGIIGPDGSPGPKGDKGSRGEMGLQGPKGFPGPPGPPGP
PGVPLSFKQDGSFQVFESINTPLRTENWLVMDLPMLDHVTEIIKTLHYLSNLIQSLKNPL
GTSDNPARICRDLHSCEQKMSDGTYWIDPNLGYSSDTIEVTCNFTGGGQTCLKPVTVSKL
EISVGRVQMNFLHLLSSKAVQHVTIHCLNVPIWRTFEDQPPSKGSVHFRAWSGEIIEAGG
EMEPHVIEDSCWMKDGRWHHTHFVFHTQDPNLLPVVNIYNLPKTTLGSHYHLEVGPVCFL
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagggatccgaaggagagattgcagaacctctcatctcgacacaaagagagtc
ctattgctctgtacagttttatattgtacttgctacctgggacttgcacaagtacactct
gaagatgtggacatcctccagaggctggggctcaagggagagaagccatcaagctccatc
cgtccagggatcattccgttccgatcgggagtcatcctcacccaacaggcacgtgtggag
gcccctgcccgctcagtcataccaccgtcctactggcccaacctggcgctgcttctgagt
gtgcgttcccaccgtgtcaacaacgccttcctcttcaccgtgctcaccggccaccgccgg
ctcctgctaggcctgcagctgaccccggggcagcttgtcctccacacagggcccaagagc
gccgtcccactccactacgacctccgcaatggccagtggcaccatctggctctggacatc
cgtgaccaaagggtgactctatactctgcctgtgggaagcagagcgttcacgcagacttg
acttcggtagacagagaaggcctggatcctgagagctccttcctgctcgggaagatgggc
cagggctcggtgcagttcgagggtgccatttgccagtttgacctgatcccctcctcccag
gcagctcacaactactgcaggtacattaagaaacagtgcagggagggtgacacctacagg
ccaaacatagctcccctcttaacccgagaccccaacatcacggccagcctggccctgcca
gctccctccgagttgaacaggaagcccatggtcatgaacctagcaaggagcgccactgca
gctgcctctgctgttaggcatgtggtgccggccatcctgctaaagcccacccctaggacc
actccttctcccctgcctggtactgtgatgttactcatgacagggcctgggctagccttc
ccgaccaaggcccagagcgagaccattacagcaccactcaggaatggagtcgcccctccc
tcctaccccatcactcagaaatcccccaagcccacccatatcaagcccgcaaatgtcaag
cccacccctgttaagcctgccaatttcaagcccacccctgccaagcccatcctagccaag
cccacctctcgcagcagcaacagccccaagaagaccaccttggggctggtggcaaagcag
aaaccctctttcactgctgcggccaagcctaccaagaataatccagactctgcccttcta
gcccagggggcagtcagccctgggccaaagaaactactacagaaaccacagcctacagca
cccaaaaagacaatagcccagcctaaagtcacagccactcgccaattcaaagccaccaat
gcacctgccaatccaaagctatcgaaagccaccgatgcacctgtcacccaacggcccacc
aaacccacctatgcaccctttaacttccccaccacgggctggtggcagacgtacgatgtg
gagccgacccatttttctctacttttgccaggaccccaagggctaaagggtgaaccaggc
cttgcgggccgtccaggaccaccagggaagtcaggcacaccagggaagaggggtcctcag
ggtgaacccggtccccatggaaaacctggccgtccaggtccacctgggcttaaggggagg
aaaggagacgctggtctctcatctggaacagcccctaaaggagagaagggagacccaggt
attcttggccaagttggactaatcggccaggctggtggaaagggacagagagggcatcct
ggtccacctggtcacacaggggagcctggggagcgaggtccagatggaagcccaggtgcc
aaaggttatcctggcaggcagggtttgccaggtcccataggagcctttgggccaaaaggc
actcggggcttcattggaatcgcgggcctttttggcctacctggtgctgatggcaaaaga
ggcattcttggggaaccagggaagaggggcaagatgggtaggccggggtttcctggagac
tttggtgaaagaggaccaccaggaccagacggggacccaggtttgcttggagcccgtggt
cctaatggagttcttggacttattggtgacatgggaccgaatgggaaggtgggccttcca
ggacccgatggactgaagggggtgtccggcaacacaggagaaccaggactgaaaggtgat
aagggtgaaattgggcttcatggacagcagggaatgatcgggttccaaggagacaagggt
gttcagggtactccagggttgtcaggtaccagaggaaaaccaggacttcagggcaggcca
ggagagagagggtctgatggagtacctggccttccaggagcagagggtttccctggagac
atggggcctcctggagagaatggcttagaaggcccaaatggaaagccaggagtgaggggg
ttgcctggtcctagaggggtgcccgggctagagggagatgagggcccacttggaccactg
ggtctgacaggagtggagggtagagtcggcatgaagggcttccctgggaagattggaacg
gatggagtgaagggagagcttggtatcaccgggaaggttggaggcatgggtgaaaggggc
ctggttggctttattgggcctgttggagagactggattggcaggggagaagggggatcga
ggggagatgggcctgccgggacctcctggagaaaagggatcaatgggtcaccaagggaca
ctaggtgaaagtgggccatctggggaacctggaagaccgggcccccctggatctcgtggg
ccaattggtaccagaggacccaaaggcagatggggtgcgagagggcccgacggtccaacg
gggaagctggggttagtgggcatgaagggccctgatggtcttccaggaaaaatgggtttt
tcgggagaggaggggaaaattggagagctgggagaagttggacctcaagggtttcccggt
attcaaggaccctctggacctctaggagaccaaggaatagcaggcgagccaggactccct
gggccagtggggacagtggggccactaggagaaactggtctacagggtcctctaggcaaa
atgagtgatccaggactgcctggcgagccaggggagaagggagcactcggagccattggt
aacatcggagagcagggactaatgggacaacggggagagccagggcttgagggagaggcc
ggtgctgctggtcctgatggaacaaagggtgaaaagggtgacatggggcacgagggcgac
aaaggagagaagggtgaaaccggaatgaagggaaaggagggccaacctgggaatcctgga
ctcataggcatcacaggacaagagggtaaatccggcaagattggtgaaagaggcaaacca
ggaagaaagggagccaaaggccatatgggtcatcttggggagacgggacgaatcggaaag
actgggccaaaagggtttgtgggaccgaagggctcaagaggaaccattggacctgtgggt
cccccaggcagaatgggtaaacagggggaaatgggtctagcaggttacgagggtcatcag
ggaccccaaggccctattgggcgtcaaggatcaaatggtgaaaagggtgagcagggggat
gatgggaaggttgagggtcctactggtcctccaggcgacagaggtcctccaggagacaga
ggagagagaggggagttaggggatccaggatacctagggcaacaaggtgtggacggaggg
agaggcaaacctggagcccctggacaacctggacatccaggacctcatgcacaacacggg
cccaaaggatccaaaggagatcaaggtcagaaaggcaaactaggtcagagaggagaatct
ggaagcagaggttcgctgggtgtggttggtctccatggcccaagaggcatggtggggcga
gaggggctggagggcgtgccaggcgtagacggagtctcagggaaggatgggtccaaaggc
atgccaggcgagcatggtgacgatggtgagttcggtctccctggcaaagctggttaccgt
ggaaaagtcggcgggctgggactgccgggcgatatgggaaccttcggaccaaagggtgaa
aggggcctcccaggacagacaggaccctcagggaagagaggctttaagggtgggatggga
ctgccagggccacagggggaccaagggcccaaaggacaacctggtgatacaggagaacca
ggttttccagggatactgggagtgtttggaccaacagggcctccaggtgacttgggacca
aaaggcatacagggaccaaaagggccacagggcacaatgggcagaggtggaatattgggt
ccgatggggattattgggcccgatggaagtccaggccctaaaggagacaaggggagccgt
ggagagatgggattacaaggaccaaaggggtttccaggacccccgggacctccaggtcct
cctggtgtccctctgtcatttaaacaggacggttcctttcaggtgtttgagtctataaac
accccacttaggactgagaattggctagttatggacctgcctatgctagaccatgttaca
gagatcattaagaccctccactaccttagtaacctgatccagagcctgaaaaatccactg
ggcaccagcgataaccccgcccgcatttgcagggacctccacagctgtgaacagaaaatg
agcgatggcacttattggattgacccaaacctgggctactcctcagatacaatagaggtc
acctgtaacttcacaggtggagggcagacctgcctaaaacctgtaacggtgtccaagctg
gagattagtgttgggcgtgtccagatgaacttcctgcatctcttgagctcaaaggcggtg
caacatgtgaccatccactgcctgaacgtacctatctggaggacctttgaggaccagcct
ccttcaaaggggtctgtgcatttcagggcgtggagtggggagatcattgaggcaggagga
gagatggagcctcacgtcatcgaggactcctgttggatgaaggatggacgctggcaccac
acccattttgtgttccacacccaggatcctaacctgctccctgtggttaacatctataac
ttacccaagaccactctcggatcacactaccacctggaggttggccctgtgtgtttcctg
taa
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