Oncorhynchus tshawytscha (Chinook salmon): 112219772
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Entry
112219772 CDS
T05605
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112219772 (rc3h2)
04121 Ubiquitin system [BR:
otw04121
]
112219772 (rc3h2)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112219772 (rc3h2)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112219772 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf-C3HC4
zf-RING_10
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
112219772
NCBI-ProteinID:
XP_042158006
LinkDB
All DBs
Position
LG20:3799704..3844202
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AA seq
1099 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSNGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVELEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSVG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAASPSWDELEGVVLAVKVMVGGLVEFTQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRPFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGSGSLTEGSTHPQLIPRGGNMMEEMKRERSVVNGSNGLTGSSRSSSGSLEQKTV
SPPKTPVNHPSAPSPHGPGSRVECGSGQPKQGHFLMRGPPHQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHHHKPCMARFLRSSHVLESSLPPSMAPPYSEQHPSFPPPRER
AGPSPYGPPPAPQYGPLAPAHGGYAPLYDSRRMWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGRVPLGYEDLFRRKQEQWTHHHHGNMNRPSQ
SSPVFTVDFGAEHDSGGDQCMNCKYRGEERLAHYSPWSCGTISTCISPFEPEHHNASAHS
CSEHSEVENGDRKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQGSNSTTPVNFRDYGPHIGHGDYRWSSCGSDSSSHSSFLESDQLGVCELSARERS
FGSGEKAGAGGLLQTDYCKDTTESEPDRDIELELSVLDMEDIDLQDNSQQSEESLELRDP
HLLTPPSSEPQRSQTDKLSADKMEAHLLKKMAFRKSLSPGGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagcccaatggacagagttcctctcctgccccatctgctacaatgag
tttgacagcaatggccacaagcccatcagtctgggctgctcgcacactgtgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
attgacctcctgcctgtcaactgtgccctgctacagctagtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggagttagagcactatgaggtgtgccgggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgaca
ctcagtccgagcgcgctcagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtggaagaggaggggcgggtacgtgcggtgcgggcgggccggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggccgccgtcagggcacggggatgccagttcctggggcctgcgatgcaggaggacgct
ctaaagctggtgttgctggccctagaggacggctcagctttgtccaggaaggtactggtg
ctgtttgtggtccagaaactggaggctaggttccctcaggcctccaagacctctgtcgga
cacgtggtccagctgctctacagagcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctaaaggaggagttccgtacctacgaggccctgcgccgcgagcac
gacgcccagatcgtgcacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcctccctgctctacggagacctcatccacaagtcacacatgcagtctatcattgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagaccctgccaacctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagacgcggcgtctccgtcgtgggacgagctggagggcgtggtgctggcg
gtgaaggtgatggtcggcggcctggtggagttcacacagaacttcagtaagaagagccac
gagacaccacagccgcaacccaacagcaagtacaagaccagtatgtgtcgagacctccgg
cagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaaatacagaatgagaaacaagaagatcagtggcgtgggccggcccttccccctagcc
caggggagtatgggtagtgaggggggcgactcaggagaggaggcctgcgctgggggactg
aagggctcagacaaggtgggatcggggtccctcacagaggggtccacacacccccagctc
atccccaggggaggcaacatgatggaggagatgaagagggagaggtctgttgttaacgga
tccaacggactcacaggctccagccgttcctcatctggctccttggaacaaaagactgtt
tctcctccaaagacgcctgtcaaccacccctcagctccttctccccatggtccggggtct
agggtagagtgtggctctggtcagcccaaacaagggcacttcctaatgagaggaccccct
caccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacaaccctaccagccagccagtaactactacacctctacaatgcaccac
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcttctctgccg
ccttccatggcccctccgtactccgagcagcacccctcctttcccccaccacgggagcgc
gcgggtccttctccctacggccccccgccggccccccagtacgggcccctggccccggcc
catggtggctacgctcccctgtatgacagtcggcgtatgtggagaccccagctgtaccac
cgcgaggatgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagagatacgcctccctggacagtccctactgctcggcgggggagcac
agagcagcgctgcacagggactcttatgggcgtgttcctcttggatacgaggatctgttc
aggcggaaacaggagcaatggacacaccatcaccacggcaacatgaacaggccctcccag
tcctcccccgtcttcactgtagactttggtgcagagcatgacagtggaggtgatcagtgt
atgaactgtaagtaccgtggtgaggagcgtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctcactcc
tgctccgaacactcagaagtagagaatggtgacaggaaacggtggctccacacatttgag
ccgtaccgtcgtctgaaagacgaggatcccatcatcccatttggagagggacccatcatc
tcgaaatggggggctatctctcgcgcctcccgtacagggtaccacaccacggaccccgtc
caggccacagcctgccagggaagcaacagcaccacccccgtcaacttcagagattatggc
ccacacatcggtcacggtgactacaggtggagctcctgtgggtctgactcatccagccac
tctagtttcctagagagtgaccagctgggagtgtgtgagctttctgcccgtgagcggtcc
ttcggcagtggagagaaggctggtgcaggaggcctgctgcagactgactactgtaaggac
acgacagagagcgaaccggacagagacattgagctggagctgtctgtactagacatggag
gacattgacctgcaggacaacagtcaacaatctgaggagtcccttgagctaagggacccc
cacctcctcacccctcctagcagtgaaccccagaggagccagacggacaagctgtccgct
gacaagatggaggctcacctgctgaagaagatggccttcaggaagtctctctcccctgga
ggtctgggctcgggaggcctcagtgtggggaagctgatgatgagaaccggccctccaagg
cttggggacatgggccctcgccccaacacaggccctgagatgctgctcaacggcagttga
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