KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112219816
Entry
112219816         CDS       T05605                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112219816
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112219816
   03041 Spliceosome [BR:otw03041]
    112219816
   03032 DNA replication proteins [BR:otw03032]
    112219816
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     112219816
Spliceosome [BR:otw03041]
 Complex A
  U1 snRNP components
   Sm proteins
    112219816
  U2 snRNP components
    112219816
 Complex B
  U1 snRNP components
    112219816
  U4/U6.U5 tri-snRNP components
    112219816
 Complex C
  U2 snRNP components
    112219816
DNA replication proteins [BR:otw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     112219816
SSDB
Motif
Pfam: LSM ATP-grasp_2 Kringle TSP9
Other DBs
NCBI-GeneID: 112219816
NCBI-ProteinID: XP_024237091
UniProt: A0A8C8JM51
LinkDB
Position
LG20:24947253..24949559
AA seq 128 aa
MSIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQ
VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGTGAGRGKAAILKAQVAARGRGRGGGIGR
GTIFQKRR
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtccatcggcgtgcccatcaagatcctgcatgaagcagagggtcacattgtgacctgt
gagaccaacactggtgaagtgtacagaggcaagctcattgaggctgaggacaacatgaac
tgccagatgtccaatatcactgtgactcatcgggatggccgagtagcccaactagagcag
gtctacatccggggcagcaagattcgcttcctgattttaccggacatgttaaagaatgct
cctatgttgaagagcatgaaaaacaagaaccagggcaccggagcaggaagggggaaggca
gccattctcaaagcccaggtggctgcaagaggacggggtcgtggtggaggaattggaaga
ggaaccattttccagaagaggcgatag

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