Oncorhynchus tshawytscha (Chinook salmon): 112219891
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Entry
112219891 CDS
T05605
Name
(RefSeq) WD repeat-containing protein 7 isoform X1
KO
K24738
rabconnectin-3b
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112219891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112219891
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
112219891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
112219891
NCBI-ProteinID:
XP_042158663
LinkDB
All DBs
Position
LG20:45254357..45607109
Genome browser
AA seq
1479 aa
AA seq
DB search
MSGNSLVLPIVLWGRTAPTHCISSLLVMDDLATIITGCHDGQICIWDMTSDLEISPRAML
FGHTASITCLSKASPCSDKQYIVSASESGEMCLWDVNDGRCIEFTKLACAHTGIQFYQFT
IGTQREGRLLCNGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIHSHRTQEDTVVAV
SVTGILKVWIITQDVNRMQDLDPVFEEESKPIYCGGCQSISFCTFTQLSLLVVCSKYWRV
FDAGDYSLLCSVPSENDQSWTGGDFIAADKIIIWTEDGCSYIYKLPASCLPASEHFRTDV
GKTAEGSIPPLVYSIADRTDKQLLICPPVTRFFYGRREPFHKLLVQGDSAGRLTLWSIPD
TSPLQPLSTAAELQVSSTISLQEAFDKLAPLSAGIIDQLSVTPGSEEPIKVTASVYIPSQ
GRLVCGREDGSIILVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSP
RYDQRSLVSGGVDFSVIVWDIFTGEMKHVFCVHGGEITQILVPPENCSNRVQHCVCSVAS
DHSVGLLSLRERKCIMLASRHLFPIQAIKWRPCDDYLVVGCSDGSVYVWQMDTGALDRCV
MGITAVEILNACDEVVPAAVDALSHPAVNLKQAMTRRSLAALKNMATHKLQTLATNLLAA
DNADKGNLQKYSNNSLVVQAMKTNLTDPDMHVLFFDVESVIIQLLTEEAQRPNPTLVSPE
TLQKAQGAADKGGSFLANKIFKQVKETMKETIKEHLLDEDEEEEEEMRRREEKSKSLSLL
EYNLTMDTAKLFMSCLHAWGLNGPLDEVCLSRLGMLKPHCPISFGLISRGGHMSLMLPTF
KESLLRQMALSTGRKLSLSEMVGKGTYGVSRAVTTQHLLSVISLANTLMGMTNATFVGEH
MKKAPVRPPRPGTPETPKKTAAPPQVSSPAVQGQIKQAAAVAATTSTTSPGIGAFPPGPA
AFHCPSVNEGWSQLAAMHCVMLPDLLGLDKFRPPLLEMLARRWQDRCLEVREAAQALLLA
ELRRIGQSGRKDTIDLWAPYLPQYVDQVSSPGTSADAAVPSPPLPDTLPVETQLPTAEEM
EVTDDDIIAGCLSNLPPNTKKICNSYEERRKQATAIVLLGVIGAEFGAELEPPKLPSRAR
TSGQAPEGFGLTTGGSNYSLARHTCKALTFLLLQPPSPKMPPHSTIRRTAIDLIGRGFTV
WEPYMDVSAVLMGLLELCADAEKQLANITMGLPLNPAADSARSARHALSLIATARPPAFI
TTIAREVHRHTAMQANSQSQQNVHTTSLGRAKTEIIRVIDILIEKMPTDVVDLLVEVMDI
IMYCIEGSLVKKKGLNECFPAICKFYMVGYCDRSHRIAVGARQGSVALYDVRTGKCQNIH
GHKGPITAVSFAPDGRYLATYSNADSHISFWQMNTSLLGSIGMLNSTPQLKCIKTYQVPP
VQPASPGSQNALKLARLIWTSNRNVILMAHDGKEHRFMV
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaacagcctggttttacccatagtgctgtggggccggacggcgcccactcac
tgcatctccagcctgctggtcatggatgacctcgccaccatcatcaccggctgccacgat
ggacagatttgcatttgggacatgacctccgacctcgagatcagtcccagggccatgttg
ttcggtcacacagcctccatcacctgcctgtctaaagccagcccctgcagtgacaagcag
tacatcgtcagtgcctcggagagtggggagatgtgcttgtgggatgtcaacgatggacgc
tgtattgagttcactaagctggcctgcgctcacaccgggatccagttctaccagttcacc
atcggtacgcagcgtgagggtcgtctgctgtgtaatggacattacccagagatcctagtg
gtggacgccaccagcctagaggtcctctactccctcgtctctaagatctctcctgattgg
atcagctccatgagcatcatacactcacatcgcacacaagaggacacagtggtggcagta
tcggtcactgggatactgaaggtgtggatcatcactcaggatgtcaacaggatgcaggat
ctggatccagtgtttgaggaggagtctaagcccatctactgtgggggctgtcagagcatc
tccttctgcaccttcacacagctctctctgctagtggtctgctccaagtactggagggtg
tttgatgcgggggactattccttgctgtgctcagtgcccagtgagaacgaccagtcctgg
accggaggagacttcatcgccgccgacaagatcatcatctggaccgaggacggatgctcc
tacatctacaagctccccgccagctgcctgcctgccagtgaacacttccgtactgatgta
ggaaagactgccgaaggctccatcccacctctggtgtacagcatcgcggaccgcacagac
aaacagctcctcatctgtcccccggtgacacggttcttctacggccgtcgggagcccttc
cacaagctgctggtccagggagattcagccggacgcctcaccctctggagcatcccagac
acctcgcccctgcagcccctctccaccgcagcagagctccaagtgtcctccaccatctcc
ctccaggaggcctttgacaagctggctcccctgtcggcgggcatcatagaccagctgagt
gtgacgcccgggtcggaggagcccatcaaggtgacggccagcgtctacatcccctcccag
ggcaggctggtgtgtggcagagaggacggaagcatcatcctggtccctgccacacagacc
gccatcgtacagctgctgcagggagaacacatgctgcggagaggttggccccctcaccgc
accctgcggggtcaccgtaacaaagtgacgtgcctgctgtacccccaccaggtgtcccct
cgctacgaccagcgctccctggtctccggcggtgtggacttcagcgtcatcgtctgggac
atcttcactggggagatgaagcacgtcttctgtgtccacgggggagagatcacacagatc
ctggtcccacctgagaactgcagtaatcgtgttcagcactgtgtgtgctctgtggccagt
gaccactccgtgggtctgctcagcctgcgggagaggaagtgcatcatgctggcgtctcga
cacctcttccccatccaggccatcaagtggcgtccctgcgatgactacctggtggtgggc
tgctctgatggctcagtgtatgtgtggcagatggacacaggtgcgttggaccgttgcgtg
atgggcatcacggctgtagagatcctgaatgcgtgtgacgaggtggtgccggccgctgtg
gacgctctaagccaccctgcggtcaacctgaaacaggccatgacacgacgcagcctggcc
gcgctcaagaacatggccacgcacaaactacagaccctggctaccaacctactggctgca
gacaacgcagacaagggcaacctgcagaagtactccaacaacagtctggtggtgcaggcc
atgaagaccaatctgacagaccctgacatgcatgtcctgttctttgacgtggagtcggtg
atcatccagctgctgacggaggaggcccagcggcccaaccccaccctggtctcccctgag
accctccagaaggcccagggagcagccgacaaaggagggtccttcctcgccaacaaaatc
ttcaaacaggtgaaggagacgatgaaggagaccattaaggagcacctcctggatgaagac
gaggaggaagaggaggagatgaggagacgcgaggagaagtctaagtctctgtcgctgttg
gagtacaacctgactatggacacggccaaactgttcatgtcctgtctccacgcctggggc
ctcaacggaccactggacgaggtgtgtctgagcagactgggcatgctcaaaccccactgc
cccatctccttcggtctcatatcccgcggaggtcatatgtctctcatgctgcccaccttc
aaggagtccctgctgcgtcagatggccctgtccacgggcaggaagttgtccctgtcagag
atggtgggtaaagggacatacggagtgtcccgggccgtgactacccagcacctgctctct
gtcatctcattggctaacaccctgatgggcatgaccaatgccaccttcgtgggagaacac
atgaagaaggcacccgtcaggcctcctagacccgggacccctgagacccccaaaaagact
gcagcacccccccaggtgtctagtccggccgtgcagggacagatcaaacaagccgctgct
gttgctgctactaccagtactaccagtcctggcattggggcttttcccccaggtccagct
gctttccattgtccctcagtcaacgaaggttggagccagctggctgctatgcactgtgtg
atgctgcctgacctgctgggtctggacaagttcagaccacctcttctggagatgttggcg
cgccgctggcaggaccgctgtctggaggtgagagaagcggcccaggccctgctcctggct
gagctgcggaggattggtcagtcaggcaggaaggacaccatcgacctgtgggccccctac
ctgccccagtacgtggatcaagtcagctcaccgggaacctccgctgacgccgccgtgccg
tccccaccccttcctgatacccttcctgtggaaacacagctgcccactgccgaagagatg
gaagtcacggacgatgacatcatagcaggctgtctgtccaacctgcctcccaacaccaag
aagatctgcaactcgtatgaagagcgtcgtaagcaggccaccgccatcgtcctgctgggg
gtcatcggggcggagttcggggcggagctggaaccccctaagctgccgtctcgtgccagg
accagtggacaggctccagaaggttttggactgactactggaggatccaactactctctg
gccagacacacctgtaaggccctgacgttcctcctcctgcaaccccccagccccaagatg
cccccccacagcaccatccgccgtacagccatagacctgattggtcgaggcttcaccgtg
tgggagccttatatggacgtgtccgctgttctcatgggactactggagctgtgtgctgac
gcagagaaacagctggccaacatcacaatgggcctgcccctcaacccagcagccgactcg
gcccgctcagcacgccatgctctctctctcatcgccacagccagaccaccggcattcatc
acaaccattgccagagaggttcacagacacacagccatgcaggctaactcccagtcgcag
cagaatgtccacaccacctctctgggccgagccaagacggagatcatcagggtcatagat
atcctcattgagaagatgccgactgacgtcgtggacctgctggttgaggtaatggacatc
atcatgtactgcatcgaaggctctctggtgaagaagaaagggctgaatgagtgtttccct
gctatttgcaagttctacatggtgggatactgcgaccggagtcaccgtattgccgtgggg
gcccgccagggttcagtggccctttatgatgtccgcacgggcaagtgccagaacatccat
ggtcataagggtcctatcacagcggtgtcgtttgctcctgacgggaggtacctggccacc
tactctaacgcggacagccacatctccttctggcagatgaatacgtctctgctgggcagt
attggcatgctgaactctacccctcagctgaagtgcatcaagacctaccaggtccccccg
gtacagcctgcctctcctggctctcagaatgccctgaagctggcccgcctcatctggacc
tctaaccggaacgtcatcctcatggcccacgacggcaaggagcaccgcttcatggtctga
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