Oncorhynchus tshawytscha (Chinook salmon): 112220019
Help
Entry
112220019 CDS
T05605
Name
(RefSeq) oocyte zinc finger protein XlCOF6 isoform X1
KO
K09228
KRAB domain-containing zinc finger protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112220019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112220019
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112220019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_jaz
zf-C2H2_6
zf-met
zf-Di19
BolA
zf-AN1
zf-H2C2_5
LIM
zf_UBZ
Zn-ribbon_8
Zn_ribbon_SprT
Motif
Other DBs
NCBI-GeneID:
112220019
NCBI-ProteinID:
XP_024237335
LinkDB
All DBs
Position
LG20:39299117..39304248
Genome browser
AA seq
685 aa
AA seq
DB search
MATAYNMFQSETTSIMAVVVETVITEISPFLRVVPNSYNPERELCTIMNLVTGEAIRKIC
QLFLVASSSLQNENVKLKTKVEQMTQLFENNTHPGKSPANFCSKPTETSSLENDSSLGDT
DGLNTDLSPRDTDSNVEHMRAALPEGNERDGHESQKNSNTTKGTRSKETKRFKCDICEKT
FSQNKRLIQHKLTHTRPFKCDVCEKTFSREGSLESHTLTHTKPFKCDDCDKTFSRNRLLV
RHKLIHTGERPFACGQCGKTFTMSKQLEHHMLRHREKTLSCKVCGNTFFTKKDLKRHQLV
HAVERPFKCLTCGKGFTKRKLLIEHERIHTGEKPYSCAVCGKSYTQSGGLSYHMRTHTGE
RPHSCSECGKRFITKSSLEKHKVIHTGQKPFTCETCGAAFGHKGNLVRHQVLHTGERPYK
CKVCGKSYLQSTLLKAHMHRHGATKPFMCDLCGKTFMYNFLMRRHHLKWHTAEGEKQKER
ERKERTRTARRPGTSTKPFSCDICLNGFSSMLTLKNHQRIHTGQKQYSCSICGKTFAYKH
TFDYHMRLHSGVKPYACKYCEKKFVLRQALEGHERTHTGEKPFKCSYCDKTFAVNTNLKR
HERVHTGEKPFKCDVCGRGFGQANNVKAHMQVHTGVRPYYCKRCGKGFSDIRHYKNHSCN
GVAVTHDQSNKSSDRTFRSRKGEMR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcttacaatatgtttcagtcagaaacaacatcgattatggccgttgtcgtc
gagacggtaattacagaaattagtccatttttgcgcgtcgtgccaaactcgtacaatccg
gagagagagctttgcacaattatgaatctggtgacgggagaggctattcgtaaaatctgc
caactattcctagtggcttcctcgagtttacaaaatgagaacgtgaaactgaagaccaag
gtggagcagatgacccagttgtttgaaaacaatacacatcctggtaaaagtcctgcaaat
ttttgcagtaaacccacagagacatcttcattggagaatgactcctctctgggagacaca
gatggactgaatacagacctctccccaagagacactgattccaacgttgagcatatgaga
gctgctctgcctgagggcaacgagagagacggccatgaaagccagaaaaacagcaatact
actaaagggacacgatccaaagaaaccaaacgcttcaagtgtgatatttgtgagaagacc
ttcagccagaacaaacggctgatacaacacaagctaactcacacaagacccttcaagtgt
gatgtttgtgaaaagaccttcagcagggaagggtcactggagtctcacacgctaactcac
acaaaaccattcaagtgtgatgattgtgacaagaccttcagtcggaatcgcttgctggta
cgtcacaagctaattcacacaggagagaggccattcgcttgtggtcaatgtggcaaaact
ttcacaatgtctaagcagcttgaacatcacatgttgcgtcacagagagaaaacgctcagt
tgcaaagtctgtggaaatacattctttaccaaaaaagatctgaaaagacatcagcttgtt
catgcagtggagagaccgttcaagtgcctgacttgtggaaagggttttacaaaaagaaaa
ctgcttattgagcacgagagaatccacactggtgaaaaaccatacagctgtgctgtgtgt
gggaagagttacacacagagtggtggcctgagttatcatatgcgaacacatacaggtgaa
cgtccgcattcatgctcagagtgtggtaagcgctttataactaaatccagccttgaaaag
cacaaggtaatccatacagggcagaagccatttacatgtgagacttgtggagctgctttc
ggccataaaggaaaccttgtgagacaccaagtgcttcacacaggggagagaccgtacaaa
tgtaaagtgtgtgggaaaagctaccttcagtccaccctcttaaaagctcacatgcaccgt
catggggcaaccaaaccatttatgtgtgacctatgtgggaagacttttatgtacaatttt
ctaatgaggcgacaccatctaaaatggcacacggctgaaggagagaagcagaaagaacga
gagaggaaagagagaacgagaaccgccaggagaccgggaacctcaacaaagccattcagt
tgtgacatatgtttgaacggcttcagctccatgctaactctgaaaaaccatcaacgaatt
cacacgggacaaaagcaatactcttgttccatttgcggaaagacctttgcctataaacat
acttttgactaccacatgagacttcacagtggggtgaagccctacgcttgtaaatactgt
gaaaagaaatttgttcttaggcaagctctagaaggacatgagcgaacccatactggtgaa
aagcccttcaaatgcagttattgtgacaagacatttgcagtcaacaccaatctcaaaagg
catgagcgagtccacacgggagagaagccattcaaatgtgacgtttgcgggagaggtttc
ggccaagccaacaacgtcaaagcccacatgcaagtccacactggagttaggccttattat
tgcaagagatgtggaaagggcttttctgacataagacactacaaaaaccatagctgtaat
ggtgtggcagtgacacacgatcagtcgaacaaatcttcagaccgcactttcagaagtaga
aagggagaaatgcggtag
DBGET
integrated database retrieval system
