Oncorhynchus tshawytscha (Chinook salmon): 112220072
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Entry
112220072 CDS
T05605
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112220072 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112220072 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112220072 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112220072 (smarcb1b)
03036 Chromosome and associated proteins [BR:
otw03036
]
112220072 (smarcb1b)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112220072 (smarcb1b)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112220072 (smarcb1b)
SWI/SNF complex
112220072 (smarcb1b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112220072 (smarcb1b)
PBAF complex
112220072 (smarcb1b)
SWI/SNF complex
112220072 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
112220072
NCBI-ProteinID:
XP_024237427
UniProt:
A0A8C8EQJ5
LinkDB
All DBs
Position
LG20:37297709..37311967
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacctttgggcagaaaccgattaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctcagtagaggagaggaagaaaatt
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctccgaatgtgaagagatt
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacactgcccaacagctcc
caccacctggatgctgttccctgctccaccaccatcaaccgcaaccgcatgggccgtgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagattgatgggcagaag
ctcagagatgcattcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctgtgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtcatcatcaagctgaatatccacgtggggaacatctccttggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctacagcatccgtggccagctc
agctggcaccagaggacgtacgccttcaggtctgatttcagtgagaatcccttgcctaca
gtggaaatcgccatccgcaacacaggcgacgctgacacatggtgccccctgctggagacc
ctgacagacgcagagatggagaagaagatcagggaccaggacaggaacactagacgaatg
agacgacttgccaacactgcccctgcctggtag
DBGET
integrated database retrieval system
