Oncorhynchus tshawytscha (Chinook salmon): 112220096
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Entry
112220096 CDS
T05605
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112220096 (setx)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112220096 (setx)
5.6.2.5 RNA 5'-3' helicase
112220096 (setx)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112220096 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
ResIII
UvrD_C_2
AAA_16
Rad17
AAA_7
Motif
Other DBs
NCBI-GeneID:
112220096
NCBI-ProteinID:
XP_024237495
LinkDB
All DBs
Position
LG20:36096189..36158200
Genome browser
AA seq
2460 aa
AA seq
DB search
MMSMCRWCTSLGDDVAKLLQRYCAVSWLAEDEEAVNEKAALNDDLDKCLECVVAYHRAKE
ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV
PLSEVLKYPYLLASPQLSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG
AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN
AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF
MVILDCLGSRFWGQIEPSQAFQAITQSPSYSGELESIRQQTMISRVKTETTYDDDMVTCS
QMVYDSNTKVSKGSRRSRGVDSNVVYEDMSSLVNLLHSDVGQALRVHDSTFLWFIPFVKS
VMDLDEHSVLYITEVVHYLCGEISTDLPKPQVRICDKVTEFFTLILVHIIELHLGSGRMN
MLYYCAPKWVGVLVKCATLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQAC
MHIIRSLLKEGTRLSPNSKCHHFLNLLNKHLRDGQQREWKLIRPEIQELQICLKDYVKMM
MNRPTISTSPPEPLDIEAGPVAPTTPPLHSSNDPSGPSSLAEFNPPIKLEGLWDDVEGST
SGGGDFSGVQRGWDINKPLVKKEPLTPEEEFVEPTNDSRPTQDNLTSLRADPEKIQVIKS
RLGQLMTKKSKSERARPSVGLSEFGKEKPENLLTSRREEASNLQGISRHPPCLQESMDNV
PLSVLKSNLKGKGGSKSLRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVGRARRP
ECLSETSQIKNEPDASDQNPSPWRDYDGDMSESQVFEFETQEDMVSAWSNGDSESNMPPE
KPKDDSPVSPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVKK
RNLLVDAKPLATKCLSKKPTVVEKRIKEPVKDAPHAVTPPLRKSSSTVHSNRLETETRSS
LTTSAISHKTSLTPAIVPPKKVRKAPEPVSTAEKLGLKKKVRKAFDLSQGSRDSVGDLRH
HGATVNVPQAKKPTRQTKRSKVTFPQKRVVKGSNNKLFQFFRQSKQALGAGISEKAEPMK
RNPKKIDEIQTPSFATEEDDEDEDLQCSQQDPASHEEQLTFNRSSQRANEDKPASSNTVS
SVLSNMDRQISPYFQRNDVTPRPSGQVPKSNEGEGEDDDDDDDADWMHLTQMEPTEMEMC
TQLEEEEDFFYTQRDPVDMDIDADSQRPFEDKGGSSDLTWFKQADEGQEAPLATQTFKKP
ATPPPSRSNLTQDDERLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAP
FSASSAPAGRGRPARPVVPARPVVPGLPVVHAQSPCVRQLPPHREVGQSLPLNRLLYKPI
APPPPPKPIPPKQPPPRPEQNLPRPPCLPLRPVQHSNTCSTPQPSTSRHDAPFRSQIPNP
EVGFRFDTNFLVQHILKWTFDMFSNYKQFGIPSEVCELPLKEVGSSFSSYDEYYKTFYPL
LLTNTFEELAGEWLKNKESGKVVTQNLKVVAHEYSHSVWNVSFTASITASDDFRQMFPRE
EDLVILWLPQNRGAYTWHEQDLLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVRL
VNKQAVRCDVVGSLVSTMREFRAICLLNSSSMRKPLLAPHVSYFQPGPEVIPSLNLPDYN
LDQVRAVRTGLSVIRNQQLTPKICLIHGPPGTGKSKTIVGMLQKLFSEGVQSMTPPVNRH
SEPRRMRVLLCAPSNAAIDNLMKKIIPVFKEKCRNIQGNCGDINLVRLGNERTISKNLKP
FSLDSQVKNKTQRAQMSQDSDIHRRRAQLDENIDKISKILPKLQKKEEMYHELAAQKSRM
LQERETLSLQLKKSRIRKQETQAQVLQDAHVVCCTLSTSGSTVLESAFRRLGHKPFSCVI
VDEAGQATETETLIPLLYHCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVKNLDR
YCKENKKPSPVVFLSCQYRMHPEICEFPSKHIYCKALKTDIETAERRGNFGWPLLPYRVF
DVTDGQEVKEGASFSNQKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVN
KNLTVDVDTVEGFQGREMDCVIVSCVRASHEQGGIGFLGNRQRLNVTITRAKFSLFILGH
LRTLQENQDWGALIKDAATRDVIISTNEMTFKTDARKIFKKELTRSSSYPLREPGPPSAA
PCPTADPPRPAPFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDPRLVVQTPQHRP
DWNPRAERIRLPQAEIRRDPRAERDPRGCNSPEQRHPTGYQNQRWAVRERDREQHRSPIT
APYPGDGVNRPPRDPSQRDYNRYSATAFNHHTHTHPRKRDPDPRWIPPTHSKRGRERTDH
NT seq
7383 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag
aggtactgtgctgtgtcttggttagcagaggatgaggaggcagtcaacgagaaggcggca
ctcaacgatgacctcgataagtgcctggagtgtgtggtagcgtaccatcgggcgaaggag
gagttacctggactgcaccggaggctatgggagttggagacgtccaggctcctggacttg
ttttcacatgcagcaaaagacgcacagccggcaaaggacctcagctatgtagaagaggac
ggccgggaaatcggagtgtcaaacatcagccccgcagtgtacgaggaccgtcttggggtt
cccctgtcagaggtcctcaaatacccctacctgctggcatcccctcaattgagtgaaatg
tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat
ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt
gctgcaaggtctttaggtaaggtggaccgagacgacttttatgaccttcaggacatcttc
acctgcatgttctacattgtcgagctgagaatcccccagaacttcccagacatggatacg
tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat
gcaaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaggctatg
gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc
ttgaaggatgaagaaccatccaacgagatggatcccttttggccagtcttgcaatgtttt
atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc
ttccaggccatcacacaaagccctagctactctggagagctcgaaagcatcagacaacaa
accatgatatcacgggttaaaacagaaactacatatgatgatgacatggtgacctgcagt
cagatggtatatgacagtaacaccaaagtgagcaagggaagcagacgctcacgtggtgtg
gatagcaatgtggtctatgaggatatgagttctctggtcaacctcctgcattcagacgtt
ggacaggcattgcgtgtgcacgacagcacatttctctggttcatcccctttgtaaaatct
gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt
ggggagatcagcacagacctcccgaagccccaggttcgcatatgtgacaaggtcacagag
ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaat
atgctctattactgcgctcccaagtgggtgggcgtgttagtgaaatgtgccaccctgcct
ggtgacgctttcgtccatacctcggaaggtccagtttctcactctgtgtcttccacatcc
tccttgagggtcagtgtgccccgaaaggcctctactagcagggctgttccacaggcatgc
atgcatatcatccggtccctgctgaaggaagggaccaggttgagccccaacagcaagtgc
caccacttcctgaaccttctgaacaagcacctcagagatgggcaacagagggagtggaag
ctgattaggccagagattcaggagcttcagatctgtttgaaggactatgtcaagatgatg
atgaacaggccaaccataagtacttctccacctgaaccgctggacattgaggcagggcct
gtggcaccaaccacaccaccacttcactcaagcaatgacccctcgggacctagcagctta
gctgaatttaaccctcctataaaacttgaagggttgtgggatgatgtcgaaggcagtaca
tctggtggtggggatttttctggagttcagagggggtgggacataaacaaaccgttggtg
aaaaaggagcccctaacgcctgaagaggagtttgtagagccgactaatgattctagacca
acccaagacaacttaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc
agactcggccagcttatgaccaagaagtccaagtctgagagagcgaggccctctgtaggg
ctcagtgaattcggtaaagagaaacctgaaaatctgctcaccagccgtagagaggaggca
tccaacctccaaggcattagcagacaccctccatgcctccaagaatccatggacaatgtg
cctctctctgttttaaaaagtaatcttaaagggaaaggaggctccaaatccttacgagat
cggagtaaaggaaactcgagacaatttgaccgaccacaatccccaccaaagtcaacttca
gatgtaattgttatatctgatgatgaggctacattagatgttggtagagcaagaaggcct
gagtgtttgtctgagacctcccaaataaaaaatgaaccagatgcctctgaccagaatcct
agtccctggcgtgattacgatggagacatgagtgaatctcaggtgtttgaatttgaaaca
caggaagatatggtgtctgcctggtccaacggagattcggaaagtaacatgccacccgaa
aagcccaaagacgatagccctgtcagtccaacttcaagagagcctttatcaagctgggaa
tgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgagaag
gagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaaaaa
agaaatcttcttgttgatgcaaaaccattggctaccaaatgcctgagcaagaaacctacc
gtggtagaaaaacgaatcaaagagcctgtgaaggatgctccccatgcagtcacaccgcca
ttgagaaaaagcagttcaacggtacattcaaacagactggaaactgagacacgctcttcc
ttaaccacatcagctatctcacacaaaacgtcattaactccagccattgtccctcctaaa
aaagtcagaaaagccccagagcctgtgtccacagctgagaagcttggccttaagaagaag
gtgcgaaaggcttttgatctttcccagggatcacgtgattctgttggtgatctgaggcac
cacggcgctactgtcaatgtcccacaggccaagaagccgacccgacagaccaagaggtcg
aaggtgaccttccctcagaagagagtggtcaaagggagtaacaataagctgttccagttc
ttcaggcagagcaagcaggcattgggagccggaatctctgaaaaggcagagccaatgaag
agaaatccgaaaaagatagatgaaattcaaactcccagttttgctacagaggaggacgat
gaagacgaggacctgcagtgttcccagcaagatcctgccagtcatgaggaacagctgacg
ttcaatcgcagctctcaaagagccaatgaggacaaaccagcatcctctaatacagtgagt
agtgtgttgtctaacatggacaggcagatctctccatactttcaaaggaatgatgtcaca
cctagaccttctggtcaagtccccaaaagcaatgaaggtgaaggtgaagatgatgatgat
gatgatgatgcagactggatgcacctcacccaaatggagccaactgaaatggagatgtgc
acgcagttggaggaggaagaagatttcttctacacacagcgggaccctgtagacatggac
attgacgcagacagccagaggccctttgaggataaaggagggtcttcagacttgacatgg
tttaaacaggcagacgaagggcaagaggctccacttgccacacagacttttaagaaaccg
gctactccgccaccctcacgctctaacttgactcaggatgatgagcgcttgttcctgaaa
ccaggaatgtctcctatgtcagttaaaaaggccaagccgtccaccaccaagatctatgca
acctcaagctccaggagtgcctccttggtgcaagagatggagaggactgccaatgctcca
ttttcggcttcttctgcacctgctggaagaggtaggcctgcccggccagttgtgcctgcc
cggccagttgtgccaggcctgccagtcgtgcatgcacaaagtccctgtgtacgacaactt
cctcctcatcgagaggttggtcagtctcttccactgaatcgactcttatacaaacccatc
gcaccaccaccaccacctaaaccaattccaccaaaacaaccaccacccagacctgaacaa
aacctcccccgtccaccttgcctgcccctccgccctgtccagcacagcaacacatgttcc
accccccagccctccacctccaggcatgacgcccctttccgaagtcagatacccaaccca
gaggttggcttcagatttgacaccaacttcctagttcaacacatcctgaaatggaccttt
gatatgttcagtaactacaagcagtttggtataccctctgaggtatgtgagttaccactg
aaggaagtaggatccagcttcagctcttatgatgaatactacaagaccttttaccccctg
cttctcaccaacacttttgaggagcttgcaggtgaatggctaaagaacaaggaatcagga
aaggtggtaactcagaatttaaaagttgtcgcacatgagtacagccacagtgtttggaat
gtcagctttacagcgagcattactgccagtgatgacttccgtcagatgttcccacgggag
gaggacctggtcattctgtggctgccccagaatagaggtgcttacacttggcatgagcag
gacctcttggatccccaagaacaatttggatatgtgcagagatccaatgtctgcaacgga
ggcgtgggccagtgcccaactctgaacctgatgataaagaccctggggaatgtgaggttg
gtgaacaagcaggcagtgcgctgtgatgtggtgggctccctggtcagcaccatgagggag
ttcagggcaatctgtctgctcaatagcagctctatgcgcaagcctctcctggccccacat
gtctcctacttccaacctggcccggaggtcatccccagcctcaacctgcctgattacaac
ctagaccaggtgagggcggtgagaaccggtttgtccgtcatcaggaaccagcaactcacc
ccaaaaatctgcctgatacacggacccccaggaacgggaaagagcaaaaccatcgtgggt
atgctgcaaaagctgttctctgagggagtacagagcatgactcctccagtaaacaggcat
tctgaaccccgccgcatgagggtcctcctgtgtgccccgtccaacgccgccatcgacaac
ctgatgaagaagattatcccagtcttcaaggagaagtgcaggaacatccagggtaactgt
ggggacatcaatctggtgaggcttgggaacgaaaggacaatctccaagaatttaaaacct
tttagcctggacagtcaggtgaaaaacaaaacacaaagggcccagatgtcacaggactca
gacatccaccggcgcagagcgcagctggacgagaacatagacaagatctccaagatattg
ccaaaactgcaaaagaaagaggaaatgtaccatgagctggcagcacagaagtccagaatg
ctccaagagagagagacactcagcctccaactcaaaaaatctcgcattaggaagcaggaa
acccaggcccaggtactgcaagatgcccatgtggtctgctgcaccttgagcaccagcggc
agcaccgtcctggagtcggcgttccggcgcctgggacacaagccctttagctgcgtcatc
gtggacgaggcagggcaggccaccgagacggagactctcatccctttgctctaccattgc
aacgccctcatcctggtgggagacccccatcaactgccccctacggttatctcccagaaa
gcgaaggagttgaagtacggccagtccctgatggctcggctggtgaagaacctggatcgc
tactgtaaggagaacaagaagcccagccctgtggtcttccttagctgccagtaccgcatg
caccccgaaatctgcgagttcccctccaagcacatctactgcaaggcccttaaaactgac
attgagactgcagagaggagggggaactttggctggcctctcctgccctaccgtgtgttt
gacgtgaccgacggtcaggaggtcaaggagggagcgtcgttcagcaaccagaaagaggtg
cagctggtagtgttcctgctgaggctgatggctgagaagcagcaggtcaaggtgggggtc
atcacgccatacaatgcccagaaggaccgcatcaaccgcgagatggccaaggtggtcaac
aagaacctcacggtggacgttgacactgtggaaggcttccagggccgagagatggactgt
gtcattgtctcctgcgtcagggcgagccacgagcagggcggcattggattcctggggaat
cgccagaggttgaatgtgaccatcacccgggccaagtttagcctgttcattctgggccat
ctacggacactccaggaaaaccaagactggggtgcgctcatcaaggatgctgcgacacga
gacgtcattatatcaacgaatgagatgaccttcaagacggacgccaggaagatcttcaaa
aaggagctgaccaggagctcgtcttaccccctcagagaaccaggccctccctctgctgcc
ccctgtcccaccgccgatccccccaggcctgctcccttccagctacgccgctcttctgag
ccagccctgttcgcccagggcagggactccccccagcagccctggtcggcatcccctccc
caggacgctgacaggcccagagacccccgtctggtagtccagacaccccagcatagacca
gactggaatccgcgagctgaaagaatcaggctcccacaagcagagatcagaagagaccca
cgagctgagagggatccacgaggatgcaacagcccagaacagcgtcacccaactggctac
caaaaccagagatgggctgtcagggagagggacagagagcaacaccgttcaccaatcacc
gcgccatacccaggagatggagtcaacagaccaccgagagaccccagtcagagagactat
aatcgctacagtgctacagccttcaaccaccacacacacactcacccccggaaacgagac
ccagacccccgatggatccctcccacccactccaagagggggagagagagaactgaccac
tga
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integrated database retrieval system
