Oncorhynchus tshawytscha (Chinook salmon): 112220256
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Entry
112220256 CDS
T05605
Symbol
rapgef1b
Name
(RefSeq) LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 1b
KO
K06277
Rap guanine nucleotide exchange factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112220256 (rapgef1b)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
112220256 (rapgef1b)
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
112220256
NCBI-ProteinID:
XP_042158526
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All DBs
Position
LG20:36517333..36599686
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AA seq
1149 aa
AA seq
DB search
MSGKIESKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKQLQVEPVVKSQEKPVNKKV
SRLEEQEKEVVSALRYFKTIVDKMVVEKKVLEMLPGSASKVLEAILPLVQVEARITHNSA
VSSCHNRVYQSLANLIRWSDHVMLDGINLDDKDNVVAVTTVIKAVLDGVKELVKLTIEKQ
EQPSPTTPNRPPPPPITTPESRSELPLTEREREILSKTPLTEAVTDVAEEDVAPPKPPLP
GLKMDALSPPPALPPKKRQSASSPTRVAVVATMSRGSSLPCSVHSQQQDYEQEFLQRRFS
GGSQSYGCDSQRLSPYSSMGKLSRSEEQLCSMEQDSGQCSRNTSCETLDNTESYDPDYDF
LHQDLAVFTGDTHLPSTATPSGVMSLSPLPESHSECSSHVPPHAQFRSPPAPHHQQPHPP
QSEYWTPSPVPTSSPCNYPASVLLQHYPRRSGAAPRFHLIRTGVAPRGDPSTRGPLPNTK
TCRRRSCCTPRHPFPSSLPTRPCPRAGGVFVTQYLASENADLPSSPPPLPEKRNKHVLAY
MQFVEDYSEPQPSVFYQTPQNESIYEQRNKRFQDVYGLNDSFSSTDSVHEPLPIPLFPPP
ALPPKKRQLSSDQVALTNATILDGSRGGPNGSLANSLVSVAICLPPPETTSLLTDSLLRT
SAVSVDEGGEGEYVNLYSSSQANGELELPPCLRPIAGDDVIQDPAPQMHSSNSKEALDKD
SRRQKSTDSVQSDEEEVDELSLIDHKEIMSRITLKQENDDGPDVRAGSGDILLVHATETD
RKDLVLYCEVFLTTYRTFISPEDLIKKLHYRYTRFCHSPDTFKKRVSKNTFFVLVRLVDE
LCLVELTEDILKQLMDLVFRLVCNGELSLARVLRKNILDKVEQKKLLRCTNSLKPLAARG
VSARPGTLHDFRSHEIADQLTLLDAELFYNIEIPEVLLWAKEQNEEKSPNLTQFTEHFNN
MSYWVRSLIIQQEKGQDREKLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQK
QTSEGLEEYCTLIDSSSSFRVYRAALADVEPPCIPYLGLILQDLTFVHLGNPDLIDGKVN
FSKRWQQFNILDSMRRFQQVHYELKRNDDIVCFFNDFSDHLAEEALWELSLKIKPRNITR
RRTEREEKT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggaaaatagagagtaagcaagactctcagcgctcccacctctcctccttcacc
atgaagctgatggacaagttccactctcccaagatcaagaggacaccatcgaagaagggc
aagcagttgcaggtcgaaccagtggtcaagagccaagagaaacccgtcaacaagaaggtg
agtcggctggaggagcaggagaaggaggtggtgagcgcactgcgctacttcaagaccatc
gtggacaagatggtggtggagaagaaggtgctggagatgctgcctggctcggccagcaag
gtgctggaggctattctacctctggtgcaggtggaggcccggataacacacaattcggct
gtgtcgtcgtgtcacaaccgggtgtaccagagccttgccaacctgatccgctggtccgac
cacgtcatgctggacggcatcaaccttgatgacaaggacaacgtggtcgcggtcacgaca
gtcatcaaagccgttctggatggggtcaaggagctggtcaaactcaccatagagaaacag
gagcaaccctcccccaccacacccaacagacccccaccaccacctatcactacaccagag
agcaggtcagagttgccactgacagaacgagagagggagatcctgagtaagaccccgctc
accgaggctgtgacggacgtggcagaggaggacgtagctccgcccaaaccccccctccct
ggcctgaaaatggatgcgctcagccctcctccagctttgcccccaaagaagcgtcagtcg
gcctcgtcgcccacccgtgtggcagtggtggccaccatgagccgcggctccagcctgccc
tgcagcgtccacagtcagcagcaggactatgagcaggagttcctccagaggcgtttctca
gggggcagccagtcgtatgggtgcgactctcagcgcctctcgccctacagcagcatgggg
aagctcagcaggtctgaagagcagctctgctccatggaacaggacagtggacagtgctcc
agaaatactagctgtgagacactggacaacacagagagttacgaccccgactatgacttc
ctccaccaggacctcgctgtcttcacaggggacacccacctgccctccactgccaccccc
tcaggggtcatgtccctgtcccccctccccgagtcccacagtgagtgctcctcccacgtg
cctcctcacgcccagttcaggtcaccacccgccccacaccaccaacaaccccacccaccc
cagtccgagtactggacccccagcccggttcccacatcatccccttgcaactatcccgca
tcagtgctcctccagcattaccccagaagaagcggcgcagctcccaggtttcaccttatc
aggacgggtgtggctcctcggggggacccctcaacgagaggtccccttcccaatacgaaa
acctgtcggaggaggagctgctgcaccccacgccaccctttcccctcttcactcccaact
cgcccatgccccagagcagggggggtgttcgtgacccagtacctggctagcgagaacgcc
gacctgccctctagtccaccgccactgcctgagaagaggaacaagcacgtcctggcatac
atgcagtttgtggaggactactcagagccccagccctcagtgttctaccagaccccacag
aatgagagcatctatgagcagaggaacaaacgcttccaggacgtctatggcctcaacgac
tccttcagcagcaccgactcggtccacgagccccttcccatacccctcttcccgcccccc
gccctgccccccaagaagaggcagctgagttcagaccaggtcgccttgaccaatgccact
atattggatggcagcaggggcgggcccaacggttccctggccaactcattggtctctgtg
gccatctgtcttcctcctcctgagaccacttctcttctaactgactctctcctccgcacc
tcggcagtgagcgtcgacgagggtggcgagggcgagtatgtcaacctgtactcatccagc
caggccaatggggagctggagctgcctccctgcctcagaccaatcgctggtgacgatgtc
attcaagaccccgccccacaaatgcactcctccaatagcaaggaggctctggacaaggac
agcaggaggcagaagtcgacagactcggtccagagcgatgaggaggaagtggatgagctc
tctctcatcgaccacaaagagatcatgtcccggataacactcaaacaggagaatgacgat
ggacctgatgtgcgtgctggatcaggggatattctgttagtccacgccacagagacagac
cgcaaagatctggtgttgtactgtgaggtcttcctgaccacatacaggaccttcatcagc
ccagaggacctcattaagaagctccactacagatacaccaggttctgtcacagtccagac
acgtttaagaagcgggtcagcaagaacaccttctttgtgctcgttagactggtggacgaa
ctttgtctggtggagttaacagaggacatcctgaagcagctgatggacctggtgttcagg
ctggtgtgtaacggcgagctgagcctggcccgcgtgctccgcaagaacatcctggacaag
gtggagcagaagaagctgctgcgctgcaccaactccctcaagccgctggccgcccggggc
gtgtccgccaggcccggaacgctgcatgacttccgcagccatgaaatcgcagatcagctc
acactcctggatgcagaacttttctacaacatcgagattcctgaggtgttgctttgggcc
aaggaacagaacgaggaaaagagtcccaatctgactcagttcacagagcactttaacaat
atgagctactgggtgcgctctctaatcattcagcaggagaaaggccaggacagagagaag
ctgctcctcaagttcattaagatcatgaagcacttaagaaagttgaacaatttcaactcg
tacttggcaatactgtctgccctggactcagcccccatccgcagactggagtggcagaaa
cagacatcagagggattggaggaatactgcactttgattgacagctcgtcgtctttccga
gtgtaccgggcggctctggccgacgtggagcctccatgcatcccatacctcggtctaatc
ctgcaggacctgaccttcgtccacctggggaaccctgatctcatcgatgggaaggtcaac
ttctctaagcgctggcagcagttcaacatcctggacagcatgaggcgcttccagcaagtg
cattatgagctgaagcgcaacgacgacattgtgtgcttcttcaacgacttcagcgaccac
ctggccgaggaggcgctgtgggagctctcactgaagatcaagcctcgaaacatcacccgg
aggcggacagagcgagaagagaagacctag
DBGET
integrated database retrieval system
