Oncorhynchus tshawytscha (Chinook salmon): 112220265
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Entry
112220265 CDS
T05605
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112220265 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112220265 (nup188)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112220265 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Nup192
Motif
Other DBs
NCBI-GeneID:
112220265
NCBI-ProteinID:
XP_042158540
LinkDB
All DBs
Position
LG20:36732016..36754902
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AA seq
1735 aa
AA seq
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MADLEMYVRSSRELWTILLGRSALREPAQIEEELDRNWERLLQGLCYYKTPSSSAAEKLK
ADKGVAQPLKDFGLRISKLLGLDQQQSVQILQCYLQEDYRGTRNTLKDVLQDERPSQALL
LKIADYYYEERVCHLRCVLLLLTYFQDERHPYRVEYSNCVNKLEKDLVNNYQKQFETLFK
AESPTWETHGNLMTERQVSRWFLQCLREQSLLLEILFLYYAYFEMGPGDLLSFTKMFKEQ
GFGLRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEDRTEQHQFSNTPAI
SKEMDQMLLTFGDIPHHGPVLLAWVLLRHTLSPDESSPVIRRIGNTSLQLGVFQYLTTML
QGLGGTGNNCTASTARMCIYGLLSFVITSFEEETLGSQQHLINAACEVLSAPSLAELFWE
TKPTMGLGMILDSAMGMFPHKTGMLLQLLTALLSDKSTAKKVYIFLDKMSFYTEVYKTKP
NDVISRDDETLWRRQAPKLLYPLGLGQTNLRMPQGVLGQVAVGDQGYVVRWDYSYSAWIL
FTCEIEMLLHVVSTADVILHCERVKPILDLVHKMISTDWTVSDCLLPLTSRIYMLLQRLT
SVINPPVDVIASCANCLIVLAARMPGKVWSSLHHTGFLPFASSPLTNMAQSISAEGMKAG
NYGNLLVLIEQPRGEYAVTIAFLRLVTTLVKGQLGSTQDKGLIPCVLLVLKEMLPTYHKW
RYNTHGVRERIGCLILELVHAILNLSPEGEASGSTPTLQSLCIYSLANTEAGQAVVNIMG
VGVDTIDVVLAAQPSSGGSEGPGQILIQTVKLAFSVTNNVIRLKPPSSAVSPLEQALTQH
GGHGSNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGGDAAAIRDAFLTR
LQSRTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGAEGSKEFLLGEWSCLQVVLD
LIDSRQQGKYWCPPLLHRAALAFLHALWQDRRDSAISVLRTKERFWENLTTPLFGTLPAP
SDITEPCVLETCAFVMKIIGLEIYYVVSGSLERSLKDALQKFSSGRRYEYWSQYVKSLVV
HVAETEEEEGVHSFSETQMVISAWRMLLILSTSHSDVMQLKEDSARLKLFMDVLDGTKAA
LLVPMSVPCLRLGSMMATLLLILLKQWRSVVATAPDVLAPLSLILESVLQADQQLMESTK
AKVFSALISALQIQGLNGGEISQLPQLLLCVCETVQDEALALIDSTRHAAQVRDIPDDKD
SMETDAVRSFQKDQRDGVCVLALHLAKELCRADEDGEHWVLVMRKIPALHSILSALELSL
RSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEVPSNGASQGFSRK
SQDAPCWPGVYRLSMSLMEILLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLVCL
DEADHTVGFLLQLSSFCKEWQFHLPHLLRDVQINLCYLCQTCTYLLHSRNMLHHYLQAKN
GEALPSGPRAQRDPQTPSKAAAEGGGGEREEAEQKALLAVQCSLLKILSKTLATLQHFTP
DCCQIILDQCMDLAEYRTLFVLSFTTSAFDADVAPSFGTLLATINVALSMLGEVEKKEPA
SLSVASLASSEETQALKSLLMFTMENCFYVLISQAVRCLKDPSIAPRDKQRLKQELGSEL
STLLSSLSRHFRRGAPSSPASSLLPSPQPPGAKASHEGQEPFIQLVQAFVRHIQR
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggacttggagatgtatgtgaggagcagccgagagttatggactatcttactgggg
agatctgcattgagggaaccggctcaaatagaggaagaactagatcgaaattgggaacga
ttacttcaagggctgtgttactacaaaacccccagttcatcagcggcagaaaaactgaaa
gcggacaaaggtgtggcccaaccattgaaggattttggtctgaggatcagtaaactgttg
ggtctggatcaacagcagagtgtacagattttacaatgttaccttcaagaagattacaga
gggacccgtaacacactgaaggatgttctgcaggatgagagaccgagccaagccctactt
ctgaagatcgctgactattactacgaggagcgtgtgtgtcatctgcgatgcgtcctcctc
ctgctgacgtactttcaggatgagagacacccttacagggtggagtactccaactgtgtg
aacaagctggaaaaggacctggtcaacaactaccagaagcagtttgagaccctgttcaaa
gctgaatccccgacatgggagactcatggcaacctcatgacggagaggcaggtgtcccgc
tggttcctgcagtgtctgagggagcagtccctgctgctggagatcctgttcctgtactat
gcctactttgagatgggtcccggagacctgctcagcttcaccaagatgttcaaggagcag
ggcttcggccttcgccagaccaacagacacctggtagacaagagcatggatgccctggtt
gaccgcattgggtacttcagctgtctgatcctggtggaaggcatggacatagacttcctc
cacaagtgtgccctagaggaccgcacggagcagcaccagttctccaacacccctgccatc
agcaaggagatggaccagatgctgctgacgtttggtgacatccctcaccacgggccagtg
ctgctggcctgggtcctgctgagacacaccctgagcccagatgagtccagccctgtcatc
agacgcatcgggaacacctccctacaactgggggtgtttcagtacctcaccaccatgctg
cagggtctgggaggcactgggaataattgcacagccagtacagccaggatgtgtatctac
ggcctcctctcctttgtcattacctcctttgaagaggagacgctgggcagccaacagcat
ctaataaatgcagcgtgtgaagtcctctctgcgcccagtctggctgagctcttctgggaa
acgaagcccactatgggattgggaatgatcctggatagcgcaatgggaatgttcccacac
aagactggtatgctgttgcagctccttactgcgctcctgtcagataagtccactgcaaag
aaggtgtacattttcctggacaagatgtcgttctacaccgaggtctacaaaacaaagccc
aatgatgtcatctctagagacgacgagacactgtggaggagacaagcaccaaaactcctc
taccctctcggcctgggccagactaacctgcggatgcctcagggtgtgctcggtcaggtg
gctgtgggggatcagggctacgtggtgcgctgggactactcctacagtgcctggatcctg
ttcacctgtgagatagagatgctgctccacgttgtctctactgcagatgtgatcttgcac
tgtgagcgtgtgaagcccatcctggacctggtccataagatgatcagcacagactggacc
gtgtctgactgtctgctgcccctcacctcacgcatctacatgttactgcagaggttgacg
tcagtcatcaaccctccagtggatgtgatagcgtcctgtgcaaactgcctcatcgtcctg
gctgctaggatgcctggcaaggtttggtccagcttgcaccacactggttttctgcccttc
gcctcctcccctctgaccaatatggcacagtccatcagtgctgaggggatgaaggcaggt
aactacggcaacctgctggtcctgattgagcagcccagaggggagtacgctgtgaccatc
gccttcctgcgcctcgtcaccaccctggtcaagggccagctgggcagcacccaggacaag
ggcctcatcccctgtgtgctgctggtgctgaaggagatgctgcccacctaccacaagtgg
cgctacaacacccacggagtcagagagaggatcggttgtctgatcctggagttggtccat
gccatcctgaacctcagtccagagggagaggctagtggcagcacgccaaccctccagtct
ctgtgtatctacagtctggctaacaccgaggctggccaggcggtggttaatatcatgggg
gtgggagtggacaccatagacgtggtcctggctgctcagcccagcagtggtggctcggag
ggcccaggtcagatccttatccagacggtcaagctggccttctccgtcaccaacaacgtg
atccgcctcaagccaccgtcgagcgctgtttcacccctggagcaggcgctgacgcagcac
ggtggccacggcagcaacctaattgccgtgcttgccaagtacatctaccacaaacacgac
ccggccctaccgcgcctcgccatccagctgctcaagaggctcgccacggtggctcccatg
tcggtgtacgcctgcctgggcggtgacgcggctgccatcagggatgcctttctgactcgg
ctacagagcaggacggaggacatgaggatcaaggtgatgatcctggagttcctcaccgtg
gccgtggagacccagccgggcctcatcgagctcttcctcaacctggaggtcaaggacggc
gcagaggggtcaaaggagtttctgctgggtgagtggagctgtctgcaggttgtgttggac
ctgattgactccaggcagcaggggaagtattggtgtccccccctgctgcaccgcgccgcc
ctggccttcctccacgccctgtggcaggaccgacgggatagcgcaatctctgtcctacgc
accaaagagaggttttgggaaaacctgaccacgcctttgtttggaacccttcccgccccc
tcagacatcactgagccttgtgttctggagacctgtgccttcgtcatgaaaatcatcggc
cttgagatctactacgtagtcagtggctctctggagcgttctctgaaggatgcactgcag
aagttctccagcgggcggcgctacgagtactggtcccagtatgttaagtccctggtggtc
cacgtggcagagacggaggaggaagagggcgtgcactcattctccgagacccagatggtc
atctcagcctggcggatgctgcttatcctctccaccagtcattcggatgtgatgcagtta
aaggaggactctgccagacttaagctcttcatggacgtgctggatgggaccaaagctgct
ttgctggtgcctatgtctgtaccctgtctacgtctgggatccatgatggctactcttctg
ctgatcctgcttaaacagtggagaagtgtggtggccacggcccctgacgtactggccccc
ctttctctgatcctggagagtgtcctgcaggccgaccagcagctgatggagagtaccaag
gccaaggtgttctctgccctcatctctgcacttcagatacagggactcaacggtggggag
atctcccaactgccccagctgctgctgtgtgtgtgtgagactgtgcaggacgaggcgctg
gcactgattgacagcactcgtcacgcggctcaggtgagggacatcccagatgacaaagac
agcatggagactgacgccgtccgcagcttccagaaggaccagagagacggggtgtgtgtg
ctggccttacacctggccaaggagctgtgtcgtgctgacgaggacggggaacactgggtt
ctggtgatgaggaagattcctgctcttcactctattctcagcgctctagaactcagcctg
cgctccaaacagaacctctacttcaccgaggctgccctgcacctgctgctcacgctagcc
cgcacaccacagggtgcagcagcagtagccggggccggcgtcatccagagtatctgtctc
cctctgctcagtgtctacgaagtgccctctaacggagcctcacagggtttctcccgtaag
tcccaggatgctccctgctggccgggggtgtaccgcctctctatgtccctcatggagatc
ttgctcaagacgctgcgctacaacttcatcaacgaggccctcgactttgtcggagtgcac
caggaacgcatactgcagtgcctgaatgcggtgcggacggtccagagtctggtgtgtctg
gatgaggctgaccacacagtgggcttcctgctgcagctgtccagcttctgtaaggagtgg
cagttccatctgccccatctgctccgagatgtacagatcaatctgtgttacctgtgccag
acgtgcacctacctcctccatagcaggaacatgcttcatcactacctccaggctaagaat
ggggaggcgctgccctccggcccccgtgcccagagagatcctcagacgccctccaaagct
gcagccgaaggagggggcggggagagggaggaggcggagcagaaggccctgctggcagtg
caatgcagcctgctgaagatcctcagtaagactctggccacgctgcagcacttcacccct
gactgctgtcagataatactggaccagtgtatggacctggcagagtacaggaccttgttt
gtgctgagcttcaccacctcggcctttgacgctgacgtggcaccctcttttggaacccta
ctggcaaccatcaacgtggccctaagcatgctgggagaggtagagaagaaggagccagcc
tctctgagtgtggcctccctggcctcgtcagaggaaacccaagccctcaagtctctgctg
atgttcaccatggagaactgtttctacgtgctcatctcccaggccgtccgctgtctgaag
gaccccagcatcgcccccagagacaaacagagactcaaacaggagcttggctctgaactg
agcaccctcctctccagcctgtcccgtcacttccgccgtggcgccccctcgtccccggcc
agcagcctgctgccatctccccagcccccaggtgctaaggccagccacgagggtcaggag
cctttcatccagctggtgcaggccttcgtacgccacatacagaggtag
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