Oncorhynchus tshawytscha (Chinook salmon): 112220319
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Entry
112220319 CDS
T05605
Name
(RefSeq) erbin isoform X1
KO
K12796
erbb2-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112220319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
PDZ
LRR_LRWD1
LRR_5
LRR_NXF1-5
PDZ_2
PDZ_6
LRR_At5g56370
LRR_9
Motif
Other DBs
NCBI-GeneID:
112220319
NCBI-ProteinID:
XP_024237883
LinkDB
All DBs
Position
LG20:26900748..27019519
Genome browser
AA seq
1428 aa
AA seq
DB search
MSSKRNLFVRLVPCRCLRGEEETVTSLDYSHCSLEAVPKEIFSFEKTLEELYLDANQIEE
LPKQLFNCQMLHRLSMPDNDLTVLPAAIANLINLKELDVSKNSIQEFPENIKNCKVLAIV
EASVNPISKLPEGFTQLLSLTQLYLNDAFLEFLPASFGRLTKLQILELRENQLKMLPKSM
HKLTQLERLDLGSNEFTEVPEVLEQLTGIKELWMDGNRLTFLPGMLGTLKQLSYLDVSKN
NLEMVDEQICGCESLQDLLLSNNALTQLPGSIGSLKKLTALKVDENQLMYLPDSVGGLAA
LDELDCSFNEIEALPSSIGQCVSIRTFAADHNFLTQLPPEMGSWKSATVLFLHSNKLESL
PEEMGDMTKLKVINLSDNKLRNLPYSFTKLNQMTAMWLSENQSKPLIPLQKEEDPETHKT
VLTNYMFPQQTRTEDCIPNSDSESFNPSLWEEQRKQRAQVAFECDEDKDERETPPREGNL
KRYPTPYPDELKNMVKTAQSIAHRLKEDESGDESGKDAKPNERIHVGVQDVGVKVIEAPR
ANGKPVEMEPKAPVCVQDSTVPLETSDSYTSQKTSLRTSDNTKTMNHEDTLESFSLQDSE
ELSSEEEMKMAEMRPPLIEISINQPKVVALSKDKKDDGKDADSLLDETVANSNQNNSNCS
SPSRMSDSVSLTTDSSQDNSLCTPEREAKMPFLPKSRQEDENMNQQKVSTPLLQNGNGPD
TTLQALLKNQQSYESKPEKIVGDYDLSMEERLAFIKKGINNGMGDGYTKWDQINMNVAKL
PLQPDNMGVQLDDCQNGTSTKEAFHHLPPPYNNENSTAPITDHLENGNQMGDHFNGRSSE
GLAVSPMRLDSATSVVRTASAGVTASSDMSLSRSTEELSPVAKAQSITNIETGEMKLYSL
DTEGGSYEGGVVGRMAGALPGAQGQSIVRSKSASLLNDQPFQVYPGSSASSSDLLSSSSK
PPVSTGRYPVPSGMAMGPPPQYNVQYTSSALPKEGLWTHRTPVPPDQGYLPPPQHSLANT
NYSNRNQAPPYPHQAHQRGPPMGPKQPGDMWAKERHLPPGGQPRSSTLQRQSSSSSTASM
GDPRRMQVPEGDYMTYRDIHTLGRGPLAIAQTMQRPLSARTYSIDGPCVPRPHTARPQPH
ELPERTMSVSDFNYQHVSPSKRPNARVKSEHSLLDGPGGPGAGARVPVDWRDQVMRHIEA
KKMEKYALSLSYNSNYAPLSSSHYGSSRDVHHTGSQGSLVFSAATDGRPYGAQGICDDVL
GPQGQQGYTMDTLRKVPLMNGQMCGPVRGQMTSCQAPMARHPSREQLIDYLMLKVSHGQQ
PQGPPQPRATQDTLHQEMRVKVEKNPELGFSISGGVGGRGNPFRPDDNGIFVTRVQPEGP
VSKILQPGDKILQANGYSFVNIDHGNAVALLKTFPTTVDMIIIREVTA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaagcggaacctgtttgtgcggctggtgccatgccgctgcctgcggggggag
gaggagacggtgacgtcactggactactcccactgcagcctggaggcagtgcctaaggag
atcttcagcttcgagaagaccctggaggagctctatctggatgccaaccagattgaggag
ctgcccaaacaactgttcaactgccagatgctccaccggctgagcatgccagacaacgac
ctcacggtgctgcccgcggccatcgccaacctcatcaatctcaaggagctggacgtcagc
aaaaacagtatccaggagtttccagaaaatatcaagaactgcaaagtcctggctattgtt
gaagcaagtgtgaatcccatctccaagctcccagagggtttcacccagctcctcagcctg
acacagctctacctgaacgacgccttcctcgagttcctaccagccagctttggcaggttg
actaaactgcagatcctggagctgagagagaaccagttaaagatgttgccaaaaagcatg
cacaagctcacccagctggagagattggacttggggagtaacgagttcactgaagtgcct
gaggtattggagcagctcactggaatcaaagagttgtggatggatggaaacagactgaca
ttcctaccagggatgctaggcactctgaagcagctgtcctaccttgacgtctccaagaac
aacctggagatggtggacgagcagatttgtggctgtgagagcctgcaggacctactactt
tctaacaatgcactcacacagctgcccggatccataggctccttgaagaaactaaccgcc
ctaaaagtggacgagaaccagctcatgtatctgccagactccgtcggaggtctggcagcc
ctggatgagcttgactgtagttttaacgagatcgaggctctgccctcctccattggacag
tgtgtcagcatacgcacttttgccgctgaccacaacttcctcacacagctgcccccagag
atgggcagctggaagagtgccactgtgttgttcctgcactccaacaagctggagtctcta
cctgaggagatgggagacatgaccaagctcaaggtcatcaatctcagcgacaacaaattg
aggaaccttccctacagcttcaccaagcttaaccagatgactgctatgtggctgtctgag
aaccagtcgaagcctctcatccctctgcagaaggaggaggatccagagacccacaagacg
gttctcaccaactacatgttcccccagcagaccaggacagaggactgcatccctaactct
gacagtgagagcttcaacccctctttgtgggaggagcagaggaaacagcgggcccaggtg
gccttcgagtgtgacgaggacaaggatgagagggagacgcctccgcgggagggcaacctg
aagcgctacccgacaccgtacccagacgagctgaagaacatggtgaagacggcccagtct
atcgctcacaggctgaaggaggacgagtcgggcgacgagtcggggaaggatgccaaacct
aatgagcggatccatgtgggagtgcaggacgtgggagtcaaggtgatcgaggctccccgc
gccaatggcaagccagtagagatggagcccaaagcacctgtctgcgtccaggactccaca
gtacccctggagacctctgattcctacacctcccagaagacctcactccggacctcggac
aataccaagaccatgaaccacgaggacaccctggagtctttttctctgcaggattctgag
gagctttcatctgaggaggagatgaagatggcggagatgagacctcctctcattgagatc
tccatcaaccagcccaaagtggtggcacttagtaaagacaaaaaagatgacggcaaagac
gctgactcgttgctggacgagacggtggccaacagcaatcagaacaacagcaactgttcg
tccccgtcacgcatgtcggactcggtgtctctgaccacggacagcagtcaggacaactcc
ctgtgcacccccgagagagaggccaagatgcccttcctacccaagagcaggcaagaggat
gagaacatgaatcagcagaaggtaagcacccctctcctccagaacggcaacggcccagac
actaccctgcaggccctcctgaagaaccagcagtcctacgagtccaagccagagaagatt
gtgggggactacgacctgtccatggaggagaggctggccttcatcaagaagggcatcaac
aacggcatgggcgacggctacaccaagtgggaccagatcaacatgaacgtggctaagctg
ccgctgcagccggacaacatgggggtccaactggatgactgtcagaatggcacgagcacc
aaggaggcctttcaccacttacctccgccgtataacaacgaaaactctacggcgcccatt
acagaccacttggagaacggcaaccagatgggcgaccactttaacggccgctccagcgag
ggattggccgtgtcgcccatgaggttagactctgccacgtcagtggtgcggactgcttcg
gcgggcgtgacggccagcagtgacatgtcgctgtctcgcagcacagaggagctgtccccg
gtggccaaggctcagagcatcaccaacatcgagacaggggagatgaagctgtactccttg
gacactgaggggggctcatacgagggtggagtagtgggcaggatggccggagccttaccg
ggggcccagggtcaaagcatcgtccgcagcaagtcagcctccctgctcaatgaccagccc
ttccaggtctaccccggctcctcagcctcttcctccgacctgctctccagctcctcaaag
cctcctgtcagcaccggccgctaccccgtcccctcaggcatggccatgggcccgccgcct
cagtacaacgtccagtacaccagcagcgccttgcccaaagaaggcctgtggacccatagg
acccccgtcccccccgaccagggctacctccctccaccccagcactctctggccaacacc
aactactccaaccgcaaccaggcccctccatatccccaccaggcccatcagagaggcccg
cccatggggcccaagcagcctggtgacatgtgggctaaggagagacacctgccccccggt
ggtcagccacggagcagcaccctgcagaggcagagtagcagttcctccacggcctctatg
ggggacccccggcgcatgcaggttcccgagggagactacatgacgtacagggacatccac
accctgggccgggggccgctggccatagctcagaccatgcagaggcctctgtcggcccgc
acctacagcatcgatgggccctgtgtccccaggcctcacaccgccaggccacagccccat
gagctgcccgagaggaccatgtcggtcagcgacttcaactaccagcacgtcagccccagt
aaaaggcccaacgccagggtgaagtctgagcactcgctgttggatgggccaggaggaccg
ggagcaggagcaagggtaccagtggattggagagaccaggtgatgcgccacatcgaggcc
aagaagatggaaaagtacgccctgtctctgtcctataattccaattatgccccgctgagc
tcctctcactacggtagctctagggacgtgcaccacacaggcagccaaggctctctggtc
tttagtgctgccacagacggacggccctacggagcccagggcatctgtgatgatgtgtta
ggtcctcaaggacaacagggctacaccatggacaccctccgaaaagtgcctttaatgaat
ggtcagatgtgtggtccagtgcgaggccagatgacgtcgtgccaggcgcccatggcccgc
cacccctccagagagcagctcatcgactacctgatgcttaaggtctcccatggccagcag
ccccagggaccccctcagccacgggccactcaagacacactgcaccaggagatgcgtgtg
aaagtggagaagaaccctgagctagggttcagtatatcaggaggagtgggaggacgggga
aacccctttcgtccggacgataatggcatctttgtgacgagggtccagcctgagggacct
gtctcaaagatcctccagcctggagacaagatcctccaggcgaacggatacagctttgtg
aacattgaccacgggaacgccgtagccctgctgaagacgtttcccaccactgtggatatg
atcatcatccgagaggtgacagcgtag
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