Oncorhynchus tshawytscha (Chinook salmon): 112220330
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Entry
112220330 CDS
T05605
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112220330
04020 Calcium signaling pathway
112220330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112220330
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112220330
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
112220330
NCBI-ProteinID:
XP_042158336
LinkDB
All DBs
Position
LG20:complement(25702133..25929977)
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AA seq
2490 aa
AA seq
DB search
MERRAPNYSKWAERRSTVVYAMRSATFGSWRMLTLGTEYSSWAQSPESLRQRQAVISENA
EETDSIDIDPSWREQQMDVPQQYDAILHLDERAASGGSRGNHNIIRTHEALNSTPWSKSN
RMARFAEGLPTRFGAGAGGGGRGAPGAGRGGARAGGPPGGQRMYKQSMAQRARTMAIYNP
NPVKQNCFTVNRSLFIFREDNLIRKYAKRITEWPPFEYLILATIIANCIVLALEQHLPAN
DKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILAT
VGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIG
VEFYMGKFHSTCFTVDTGERATAFPCGTEAPARMCPNGTECTEYWIGPNYGITNFDNILF
AVLTVFQCITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKE
RERVEKRQDFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDENAEEKSPLDVLKRGKVK
KSKNDLIGAEEGEDHFTDMSSVAPPGSPFGRASVKSSKLESSSYFRRKERRMRFFIRRMV
KAQSFYWIVLCLVGLNTLCVAIVHYDQPEWLTTALYLAEFVFLGLFLSEMSLKMYGLGAR
NYFHSSFNCFDFSVIIGSILEVVWSMIKPGASYGISVLRALRLLRLFKFTKYWNSLRNLV
VSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEEETPTTNFDTFPAAILTVFQI
LTGEDWNAVMYHGIESQGGVRRGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQELT
KDEEKQEEEANKKLALQKAMEVKEVSPMSAANISIAAFVKQNRDALSRSSSVSSVHSPKE
QQRANKIMSVWEQRTNQLRRNNLRASSEALFNELDPEERLRVSSALHLRSDMKTHNDRPL
VVEPGNGDNPRPPEEDRDGADPQKEGGDPHGPQPRKHYRHRERNGENEESRHHTHHSRSR
DHYHTDGPRSKEGKVERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHSDRQGNG
ALATRDRLESRGRGHREENGERRKHRSRRVRAQSTLDGDECRENGERNGDRDQGHRDRQT
DSQRESLATSPVQPPAGLQAGEKQEDADNQKNSHRASQAGLNSNTVHIPVTITAPSRETT
IIPMDNIDCENLPLNEEKKDLEEELKNGPKHILPYSSMFVFGQTNPVRRLCHYVVNLRYF
EMCILSVITMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPG
SYFRDLWNILDFIVVSGALVAFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVF
DCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGKFLDYDGD
EVAAQDREWKKYEFHYDNVLWAFLTLFTVSTGEGWPMVLKHSVDATYEDEGPSPGFRMET
SIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRY
MPADKQSFQYKMWQFVVSPPFEYSIMTMIALNTVVLMMKFHGAPELYEAMLKHLNIVFTA
LFTLECILKIIAFGPLNYLKAAWNVFDFVTVLGSITDILVTEIKTDKLINLSFLRLFRAA
RLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEESAIN
HHNNFQTFFQALMLLFRSATGEAWHEIMLSCLSNRPCDKLSGTGGKECGSDFAYFYFVSF
IFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFVRVWAEYDPAACGRMTYLDMYE
MLRHMSPPLGLGKKCPPRIAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLASGVL
AQRLCDADLRKEISRVWPNLPPKTIDLLVTPYKNDEFNELLCPFAVVNRELTVGKVYAAL
MIFDYYKQNRAKRLEQQLGLDFTGTIKNKKGPAFFCPMPMNHMQEEGTTVSRAIPLPSSQ
PEPESQAEPTPSTTSLTNGEAVPSTRSPIKESGEQLSQEGQRSSSRKRILQRGQSEDVPY
SNKPQESVEMRQVENGADIGGYSGLDGHGRAASMPRLDSQYNRNHPRHLPGTYLAPIADI
SPIRRSASTLASQCHREMSLRDYTLERPSQAQAQASSAPGQAQDRPHHHHHHRCHRRRDK
KQKSLDRATSVQPSSTACERGSSVDPLVEGLTRERARERDRGRPHEKRHHSAAGETKRYY
SCERYVGREHCHTKSAGPSRSTSPGETHDLGLLKQSIRMSKGSQVVLTFGSSPSCRGRRQ
LPQTPLTPRPAVAYKTGNSLPMQFGSTGHQSFLSRGLSERNALLESPPIPVTLIGLDPNL
SPCPRNAPPCRLPEEPDDFQDAVSNHGGSHSPRIIASASHGAAGHSSAPAPQGRVGIPNG
YHFTLGVNAVSSSSPRGTGNFREKEEDDWC
NT seq
7473 nt
NT seq
+upstream
nt +downstream
nt
atggagaggagggccccaaactactccaaatgggcggaaaggcgatccactgtggtttat
gcaatgcgctctgccacattcggctcgtggaggatgctgactttgggcacggaatacagc
tcatgggcccagtctcctgaaagccttcgtcaacgacaggcagtgataagcgagaatgct
gaagaaacggacagcatcgacattgacccgtcatggagagagcagcagatggacgttcct
caacagtatgatgccatcctgcaccttgacgagagagcagcttcaggagggagtcgtggt
aatcataacatcattcgtacacacgaagccctcaatagcacgccatggtccaagtctaac
agaatggctcgcttcgcagaaggtctacccacccgctttggagctggagcaggtggagga
ggcagaggtgcgcccggcgcaggcagagggggcgcccgggctggtggtcctccaggcggc
caaaggatgtacaagcagtcgatggctcagagagccaggacaatggccatatacaaccct
aaccctgtcaaacagaactgcttcactgtcaaccgatccttgttcatctttcgagaggac
aatctcattaggaagtatgctaagcgaataaccgaatggcctccgtttgagtacttgatc
ctggccaccatcatcgccaactgcatcgtactggccctggagcagcacctaccagccaat
gacaagacccccatgtcagaacgtctggatgacacagagccctactttattggaatattc
tgtttcgaggctggcattaagattatcgccttgggctttgcatttcacaaaggctcgtac
ctccgcaacggctggaacgtaatggactttgtggtcgtcctcactgggatcctggccacg
gtgggctcagactttgacctgaggactctgcgagcggtgagagtactgagaccactcaaa
ctggtgtctggcatccccagtcttcaggtggttttgaagtctatcatgaaggccatggtg
cctctgctccagataggcatgctgctcttctttgccatactcatgtttgccatcatcgga
gtggagttctacatgggcaagttccactccacctgcttcactgtcgacactggtgagcga
gcaacagcgttcccctgtggtacggaggccccagccaggatgtgtcctaatggtacagag
tgtacagagtactggatcggccccaactacggcatcaccaactttgacaacatcctgttt
gccgtgctcaccgtcttccagtgcatcaccatggagggatgggtggacatcctctacaat
gctaacgatgcctcggggaacacctggaactggctctacttcatccccctgatcatcatc
ggatccttcttcatgctcaacttggtcctgggtgtcttatcaggggagtttgccaaagaa
agagagcgtgtggagaagaggcaggactttctaaagctgcgcagacagcagcagatagag
agagagctgacaggatacctggagtggatatgcaaggcagaggaggtgctgctggaggag
gaggatgagaatgcggaggagaagtcccctctggacgtgttgaaacgaggcaaggtaaag
aagagtaagaatgacctgattggtgctgaggagggagaggatcacttcactgacatgtcc
tctgttgcccccccaggctctccgtttggccgagccagcgtgaagagcagtaagctggag
agctcatcctacttccgccgcaaagagaggagaatgcgtttcttcatccgtcgcatggtc
aaagcccagagcttctactggatagtactatgtctggtgggcctcaacacactgtgtgtg
gccatcgtccactacgaccagcctgagtggctcaccactgccctctacctggcagagttt
gtgttcctgggtctgttcctgtctgagatgagcctgaagatgtatggcctgggagccagg
aactacttccattcctctttcaactgcttcgactttagtgtgataatagggagtatactt
gaggtggtgtggtctatgatcaaaccaggggcatcctatggcattagtgtgctgagggct
cttcgtctgcttaggttattcaaatttaccaagtactggaactccctgaggaacctggta
gtgtctcttctcaactcaatgaagtccattatcagcttgctcttcctcctcttcctcttc
atcgttgtctttgccctgctgggcatgcagctcttcggaggacagtttaattttgaagag
gagacgccgacgaccaacttcgacactttcccggcggccattctcaccgtcttccagatt
ttgactggcgaggattggaatgcagtgatgtatcatggtattgagtcccaggggggcgta
cggcgagggatgttctcctcggtctacttcatcgtcctcacactctttggaaactacacg
ctcctgaatgtcttcttagctatcgccgtcgacaacctcgccaatgcacaggagctcacc
aaggatgaggagaagcaggaggaagaagccaataagaagctggccctgcagaaggccatg
gaggtgaaggaggtcagccccatgtcagcagccaacatctctatcgctgcttttgtaaag
caaaatcgagatgcactctctcgcagctcgtccgtctccagcgtgcattcacctaaggag
cagcagagagccaataagataatgtcagtgtgggagcagcgcaccaaccaactgcgtcga
aacaacctgagagccagctccgaggctctgttcaacgagctggaccccgaggagcgtctg
cgggtctcctccgccctccacctgcgctccgatatgaagacccacaacgaccgcccccta
gtggtggagccaggtaacggggacaatccccgaccccccgaggaggacagagacggagca
gacccccagaaagagggaggagacccccacggtccacagccacgcaagcactaccgtcac
cgggagaggaacggggagaatgaggagagcaggcatcacacccaccacagccgcagtagg
gaccactaccacacagacgggccccggtccaaagagggcaaggtggagaggaaccatagt
cgagagggggggcagggccacaggcaccatcaccaggctgaatccccagaggagggggtt
aatggagggggagagggaagggaagaccgccaccaccactccgacagacaggggaacggg
gccctggctaccagggacagactggagagcaggggccggggccacagggaggagaacgga
gaaaggaggaagcaccgctcacgcagagtcagggcccagtcaaccctggatggagacgag
tgcagagagaacggagagagaaatggagacagggaccaaggacacagggacaggcagacc
gactctcaaagggagagcttggccaccagtcctgtgcagcctcctgcaggtctgcaggct
ggagagaagcaagaggatgctgacaaccagaagaacagccacagagccagccaggcaggc
ctgaacagcaacactgtccacatccctgtcaccatcaccgccccatccagagagaccacc
atcatacccatggataacatagactgtgagaacctccccctgaacgaggagaagaaggac
ttggaggaggagctgaagaacggtcccaaacacattctcccctacagctccatgtttgtg
tttggacagaccaacccggtgcgtcggctgtgccactacgtggtgaacctgcgttacttt
gagatgtgtatcctgtcggtcatcaccatgagcagcatagccctggctgctgaagaccct
gtgcaggccaatgcaccacgcaacaacgtgctcaagtatctggactacgtcttcacagga
gtgttcacctttgagatggtgattaagatgatagacctgggactgctccttcatcctggt
tcttacttccgggacctgtggaacatcctggactttattgtggtcagtggagctctggtg
gcgttcgcctgctcaggaactaaaggcaaggacatcaacaccatcaagtctctcagggtg
ctgcgagttctaaggcctctgaagaccatcaaacgactgccaaaactcaaggccgtgttt
gactgtgtggtcaactctctgaagaacgtgctcaacatcctcattgtctacatgctcttc
atgttcatcttcgctgtgatcgctgtgcagctgttcaagggcaagttcttctactgcacc
gacgagtctaaaggtctggagaaggactgcaggggtaagtttctggactatgacggtgat
gaagtggcggcccaggatcgtgagtggaagaagtatgagttccattatgacaatgtgctg
tgggccttcctcaccctattcaccgtctccaccggggagggctggccaatggtcctaaag
cattctgtggatgccacctatgaggatgagggtcccagcccaggcttccgtatggagacc
tctatcttctatgtggtctactttgtggtctttcccttcttctttgtcaacatctttgtg
gctttgatcatcatcaccttccaggagcagggagacaaggccatgtcagagtgtagtctg
gagaagaacgagagagcttgtatcgactttgccatcaacgccaagcctctgacgcgctac
atgccagcagacaagcagtcgttccagtataagatgtggcagtttgtggtgtcgccgccc
tttgagtactccatcatgaccatgatcgcactcaacactgtggtgctgatgatgaagttt
cacggtgctccggagctgtatgaggccatgctgaagcacctgaacattgtgttcacagct
ctcttcacactagagtgcatcctcaagatcatcgctttcggaccactgaattacttgaag
gcagcttggaacgtgtttgactttgtgacagtattggggagtatcacagacatcttggtc
acagagattaagacggacaagctgatcaatctgagtttcttgaggctgttcagggcagcc
aggctcatcaagctgctgaggcagggctacaccattcgcatcctgctatggacctttgtc
cagtccttcaaggccctaccttatgtctgcctcctcatcgctatgctcttcttcatctac
gccatcatcggcatgcaggtgtttggaaacattgagctgaatgaggaatcagccatcaat
caccacaacaacttccagaccttcttccaggctctgatgcttctgttcaggagtgcaaca
ggtgaggcgtggcatgagatcatgctgtcgtgtctgagtaaccgtccgtgtgataagctg
tcagggaccggagggaaggagtgcggcagtgactttgcttatttctactttgtctccttc
atcttcctctgctccttcctgatgctcaatctgtttgtggcggtcatcatggacaacttt
gagtacctgaccagagacgcctctatcctggggcctcaccacctggacgaattcgtccgt
gtttgggccgagtacgaccctgctgcctgtggccgtatgacctacctcgatatgtacgag
atgctccgtcacatgtcccctccactaggtttgggaaagaaatgcccgcccagaatcgcc
tacaagcgattggttaagatgaacatgcccattgccgatgacaacacggtgcacttcacg
tccactctgatggcgctcatccgcactgctctggagatcaaactggcgtctggagtcctg
gcccagcgtctgtgtgacgctgacctgaggaaagagatctccagagtctggcccaacctg
cctccgaagactatcgacctgctggtcacaccatataaaaatgacgagttcaatgagctt
ctttgcccctttgcggttgtaaaccgagagctgacagtggggaaggtctacgctgccctc
atgatctttgactactacaagcagaaccgggccaagagactggaacagcaactgggactg
gacttcacagggacaattaagaataaaaagggcccagccttcttctgccccatgcccatg
aaccatatgcaggaggaggggacaacagtctccagagccattcccctgccatcctcccaa
cctgaaccagagtctcaggcagagcccacgccatccaccacctctctaaccaatggggaa
gcagtaccaagcactagaagtcccataaaagagtcaggagagcaactgtctcaggagggc
caacggtccagcagtagaaaaaggattctacagaggggccagtcagaggacgtgccctac
tccaacaaacctcaggaatcagtggagatgaggcaggtggagaacggtgctgatataggg
ggctactctggtctggatggccatggcagagcagcctccatgccaagactggactcccag
tacaatcggaaccaccctcgtcacctacctgggacctacctggcacctattgctgacatc
agtcctatcaggcggtcggcgtccacgttggcttcccagtgccaccgggagatgagtctg
agagactacaccctggagcggcccagccaggcccaagcccaggcctcctcagccccaggt
caagcccaggacaggccccaccaccatcaccaccaccgctgtcacagacgcagggacaag
aagcagaagtcgcttgacagggcaaccagcgttcagccttctagtacagcatgtgagagg
ggttcgtctgttgacccccttgtggagggcttgaccagggagcgggcgagggagcgtgac
cgcggccggcctcatgagaagaggcaccactctgcagccggggagacgaagcgttactac
tcctgtgagcgctacgtaggcagggagcactgccacaccaagtcagctggccccagccgc
tccacctcccctggagagacccacgacctaggcctcttgaagcagagtatcaggatgagt
aaaggcagccaagtggtcctaacctttggatctagcccatcctgccgtgggcgcagacag
ctcccccagacccccctgaccccccgccccgccgtggcctacaagactggaaactccttg
cccatgcagtttggttccacagggcaccagtcctttctcagtcgtggactctcagagcgt
aacgccctgctggagtcaccccccatacccgtcaccctcattggcttagacccaaacctg
agcccctgtccgcggaacgccccaccatgcagactccctgaggagcctgacgacttccag
gatgctgtgagcaaccatggagggagccactcccctaggatcattgcctcagcctcccat
ggggctgccgggcactcttctgcacctgccccacagggccgggttgggatcccaaacggg
taccacttcactcttggggtcaatgccgtttcaagctccagccccagagggactgggaat
tttcgtgagaaggaagaggatgactggtgctag
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integrated database retrieval system
