Oncorhynchus tshawytscha (Chinook salmon): 112220346
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Entry
112220346 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112220346
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112220346
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
112220346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
RING_XB3-XBAT31
zf-rbx1
zf-RING_6
U-box
TRAF3_RING
LemA
Motif
Other DBs
NCBI-GeneID:
112220346
NCBI-ProteinID:
XP_042187412
UniProt:
A0A8C8CD42
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Position
LG02:18251665..18394361
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AA seq
1060 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCANCVLPWVIQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQKLDTHCCLKAMKAHNSALHGKVVNLD
KEFKKQSLKSSKREKSLIAQLSAVHNELQMTALKYQKKFTEYSARIDSLTRTLAPPCKGG
ETKNLTAILHREGGSLGFNIVGGRPCADDHEGTSNEGIFVSKIVEKGPTDKEGGLQIHDR
IMEVNGKDLSKATHDQAVEVFRTAKEPIMVHVLRRAPRPKPSIPASDTEVVDISTQTDIT
FEHIMALTKLPATTPTVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSCSHRKLTYSQDTVGSTELPFSNESFISADYDHADFLGIPADECERFRELLELK
CQVRSVGGPHGLYCQSARAGRAEEGVDKELELLNEELHSIELECLNIVRAHKMQQLREQY
RESWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLELSP
DNSLRRGEENQGEAGAYSSAGLNNRILKPLLSPVLEADGPSRIRPSSSKESECDLQAEEK
ERKLGESTHKLAQPRSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSRGD
PVTPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAISEL
KIGRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagattttaaatgcaatttg
tgtaataaggttctagaagacccgctcactactccgtgtggtcacgtcttctgcgcaaac
tgtgtgctgccatgggttatccagaaaagcagctgccccgtcaaatgtcaaaggatctcc
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcatcatctagcagagcat
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaggtgctc
aatctgaaggacatggatgcccatatgcgcgaatcgtgtgactacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaaaattagacacccattgc
tgtttgaaagccatgaaagcacataatagtgcattgcacgggaaggtggtcaacttggac
aaagagttcaaaaagcaatcattgaaatcaagcaaaagagagaaatcacttattgctcaa
ctctccgcggtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagtgcaaggatcgattcgctgactaggacccttgctcccccgtgcaagggcggg
gagacaaaaaacctcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgaaggcacttcgaatgaaggaatttttgta
tccaagatcgttgagaagggaccaacagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgcacggccaaggagcccatcatggtccatgtgcttcgccgggccccccgccccaaa
ccctccatccctgcctcagacaccgaggtggtagacatcagcacccagacagacatcacc
tttgaacacatcatggccctcaccaagctacctgccaccacccccaccgtggctgtgctg
gagcaatacctaatgcctgaggagcattcccctgggcatgagtactttgaccccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggaatatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttggtttgactgtctgctacaggactgatgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgcctactggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccacgctgttg
tccaaccaccacgagaaggatagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacacgcaacgacgagagctctgagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagctgcagccacaggaagctgacctacagccaggacaccgtg
ggcagcactgaactgcctttcagcaatgagtccttcatctctgcagactacgaccatgct
gacttcctgggtatccctgccgatgagtgtgagcgcttccgagagctcctggagctgaag
tgccaggtgaggagcgtggggggcccccatggcctgtactgccagagtgcaagggccgga
cgggccgaagagggggtggacaaggagctggagctgctgaacgaggagctgcacagcatt
gagcttgaatgcctcaacatcgtccgggcccacaagatgcagcagctaagggagcagtac
cgcgagtcgtggatgctgcacaacagcggcttccgcaactacaacaccagcatcgatgcg
cgccgccacgagctctctgacattaacgaactgcccgagaagtcggacaaggacagctcc
agcgcctacaacactggagagagctgccgcagcacccccctcaccctggagctgtcccca
gacaactccctccgaaggggggaagagaaccagggcgaggccggggcctacagcagcgca
gggctcaacaacaggatcctcaagcccctgctgtctcctgtcctagaggccgatggcccc
agcagaatcaggccctcctcctctaaggagtctgagtgtgacctgcaggcggaggagaag
gagcgtaagctgggagagtctactcacaagctggcccagccccgctccctgtacaaacac
gcccacatcccggcccatgcccagcactaccagagctacatgcagctgatccagcagaag
tctgccgtggagtatgcccagagccaaatgagcctggtcagtctggtcagccgcggtgac
cctgtgacccccagagacatgctggagcccaagaaggagtggaaggtgaagatccgcagc
gatggcacgcgctacatcaccaagaggcccatcagggacaagctgctgaaggagcgcgcc
ctgcgtatccgcgaggagcgcagcggcatgaccacagacgacgacgctatcagcgagctg
aagatcgggcggtactggagcaaggaggagaggaagcagcacgcggtgcgcgccaaggag
cagaaacagcgccgcgagttcatgaagcagagccgcgccgactgcctgaaggaacaggcc
agcctggatgacgacaagaaggagcccaatatcattgagctgagccacaaaaagatgatg
aaaaagaggaacaagaaaatctttgacaattggatgactatccaggaacttttgacccac
ggtgctaagtcgcctgacggcacgcgagtgtacaactccctcctgtctgtcaccacagtg
tag
DBGET
integrated database retrieval system
