Oncorhynchus tshawytscha (Chinook salmon): 112220387
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Entry
112220387 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: neurofilament medium polypeptide
KO
K04573
neurofilament medium polypeptide (neurofilament 3)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112220387
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type IV
112220387
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
Homez
Motif
Other DBs
NCBI-GeneID:
112220387
NCBI-ProteinID:
XP_024238031
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All DBs
Position
LG20:23351859..23358320
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AA seq
786 aa
AA seq
DB search
MSYHPVDTIGSPFRRSMDSRTTYGRSTGTPSSGFRSQSWSRASPGSTMTSSYKRSVNMPV
ARAYSSTLLSSADSVDFNQTNGDYRRSNEKEQLQGLNDRFSGYIDKVHYLEQQNSQIEEE
IQTLRQKQVSQSQLGDLYDQELQELRSMLEQIHHDKAQIQLDTDHVEDDIQRIRDRFDEE
ARIRDETEGIIRALKKDMTDSDLVKSEFEKKVQSLHDEIAFIRNNHEEEVSDLFAQVQAS
QVTMERKDIQKTDITEALREIRTQLEGHSNQNLQQVEDWFTCRYSKLTDAAAQNKDAIKS
ARDEIAAYRRQLQSKTVELESVRGTRESLERQLNDIEDRHNNDLSSLQETIHQLDNELKG
TKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETHFSTFPYHHTITSSKKSKYEPP
KLKVQHKFVEEIIEETRVEDEKDEMDQALADMAQEFSATLEAEATDEGEDEGEEGGEEAE
GEGGEGESEEVVATTEAQVSSTTPAEEEEEDKEGDDEEEEGEKEEEGEKGEEGEGEKGDD
TEGGDEGEGEGELEETVLCSKVPESKASPDKEMVGEKEGSRGEEETGEGEGEEEGDDQDE
DAGSDKGSKDGDDKDEEDEKKGKDEKEDKTDEKAAVAKTEAPKTEAPKSEAPKVEDQKSE
SPKXLKPDSLKAESPKAGSPKSESPKAGSPKNESPKAVTPKSESPKFTGSPKSESPKTTG
SPKSESPKLGSPEAESPKGEFPKPEAPMSEAPKAAEEKVDKKSDSEEERKVEKKDAAMNG
DVEKIT
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccacccggtggacacgatagggagtccattcaggagaagtatggatagtagg
accacctacggccgctccactggcaccccctcaagcgggttccgttctcagtcctggtcc
agggcaagcccaggctccacgatgacctcctcctacaagaggagcgtcaatatgccggta
gccagagcgtacagctccacactcctcagctccgccgacagcgttgatttcaatcaaacg
aacggagactacaggcgctccaacgagaaagagcagctccaggggctcaacgaccgcttc
tccggttacatcgacaaggtgcactacctggagcagcagaacagccagattgaagaggag
atccagacgctgcggcagaagcaggtgtcgcaatcccagctaggcgatttatacgaccag
gaactccaggagctgcgctccatgctggagcagattcaccacgataaagcgcagatccag
ctcgacacggaccacgtcgaggatgacatccagagaattagggaccgcttcgatgaggaa
gcccgcatcagggatgagacggaaggcatcatccgggcgttgaaaaaagatatgaccgac
tctgatttggtgaagtcagagtttgagaagaaagttcagtcactgcatgacgagattgcc
tttatccgcaacaaccacgaagaagaggtgagcgacctgttcgcccaggtgcaggcgtcg
caggtgaccatggagaggaaagacatccagaagacggacatcaccgaggcgctccgggag
atccgcacccagctcgagggccactccaaccagaacctgcagcaggtggaggattggttc
acgtgccgctactccaagctcactgatgctgcggcacaaaacaaagatgcaatcaagtcc
gcccgtgatgagatagcagcctaccgtcgccagcttcagtccaagaccgtggagttagaa
tccgtccgtggaaccagggagtcactggagaggcagttgaatgacatcgaggaccgacac
aacaacgacctgtccagcctgcaggagaccatccaccagctggataatgagctcaagggc
acgaagtgggagatggcacgtcatctgcgtgagtaccaggacctgctcaatgtgaagatg
gccctcgacattgagattgctgcctacaggaaactcctagaaggtgaagagacccacttt
agcactttcccctaccaccacaccatcacctcctctaagaagtccaagtatgagcctccc
aaactgaaagtccagcataagtttgtagaggagatcatcgaggagaccagggtagaggat
gagaaggatgagatggaccaggccctggctgacatggcccaggagttttctgccactctg
gaggcagaggcaacagatgaaggagaggatgagggagaagagggaggagaagaagcagag
ggagaagggggagagggtgaatcagaagaggttgtagccaccactgaagcccaagttagc
tccaccacacctgctgaggaggaagaggaggacaaagaaggtgatgatgaagaagaagag
ggagaaaaagaagaagagggtgagaagggagaagagggtgagggtgagaagggagatgat
acagaaggtggtgatgagggagaaggagagggggaattagaggagacagtcctgtgctct
aaagtcccagaatcaaaggcctctcctgacaaagagatggttggagagaaggagggaagc
agaggagaagaggagacaggagagggagagggagaagaggagggtgatgatcaagatgaa
gatgcaggtagtgacaaaggatccaaagatggagatgataaggatgaggaagatgagaag
aaaggaaaggatgagaaagaagacaaaacagatgagaaggcagctgtagccaagacagag
gctcccaaaacagaagcccccaagagtgaggccccaaaagttgaggaccagaaatctgag
tccccaaagnccctcaagccagactccctaaaagctgaatccccaaaggctgggtccccg
aagtctgagtccccaaaagctggatcccccaaaaatgaatctcccaaagctgtaaccccc
aaatcggaatccccaaaatttacaggatcccccaaatctgaatccccaaaaactacagga
tcccccaaatctgaatcccccaaattaggatcccccgaggcagagtcccctaagggtgag
ttccccaaaccagaagctccaatgtcagaggcccccaaggctgcagaagagaaagtagac
aaaaagagtgattcagaggaagagaggaaggtagaaaagaaagatgcagccatgaacgga
gatgtggagaagattacctga
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