Oncorhynchus tshawytscha (Chinook salmon): 112220393
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Entry
112220393 CDS
T05605
Name
(RefSeq) contactin-4 isoform X1
KO
K06762
contactin 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220393
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Contactins
112220393
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_C17orf99
V-set_CD47
Tissue_fac
C2-set
Pur_ac_phosph_N
C2-set_2
Motif
Other DBs
NCBI-GeneID:
112220393
NCBI-ProteinID:
XP_024238043
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All DBs
Position
LG25:complement(1501933..1729388)
Genome browser
AA seq
1029 aa
AA seq
DB search
MMLLWKLLVLKSLMGCLAESSVLQSPVFTKQPGSIVFPVDSQENNRDVVFSCEAQGSPSP
LYRWKLNGTAITPKSGSHYSLSGGNLRISHLNKDQDAGTYQCLASNSFGTIVSREASLTF
AYLGNFKTHRRNSVSVREGQGVVLLCGPPSHSGDLTFSWIFNEYPSFVKQDTRRFISQET
GNLYIAKVEPSDVGNYTCVVTNTVTKTRVQGPPTPLVLRSDGIMGEYEPKIEVQFPEIVH
VAKGLTVKLECFALGNPVPSINWSRVDGIPFSRKVDVRKASGVLEIPYFQQEDAGTYECV
AENSRGKNTVKGKLSFYAPPHLIEKPEDVQKPIDDSLVWECKATGKPKPSYRWMKNGENL
ESLEERIQVANGALSISRLTLSDIGMYQCVAGNKHGEVYSNAELRVIAVAPDFSQNQLRS
PTMVKEGGDVLIECRPKMSPWGVISWRKGSEALRESHRVSILDNGNLRIQNSTRPDAGLY
TCVARNQFGVASSSGTLMVKEPTIITTAPSTLDVTVGESIVLPCQVTHDPSLKLVFTWFF
NEQLIHFGDHGGYFEKVGGQHSAGDIMIRNIQLRHAGKYTCAVQTKVDSISIAADLVVRG
PPGPPTSIHVEEISDTTASLSWRPGPDNHSPITTYTIQARTPFSLGWQAVTTVPEVVGGR
SLTATVIDLSPWVEYEFRVLASNAIGTGEPSKPSKQARTKETSPKVTPANVSGGGGSRSE
LVITWEPVPEELQNGGGFGYVVAFRPSGATGWMQAAVPSSEASKYVFKNESIQPFSPFQV
KVGVYNNEGEGPFGPVITIYSAEEEPGRAPTRIRAKSLSASEIEVSWKALPWNTSKRRVL
GYELRYWEKREKEEAASVQRTVGNQTSAIIRGVRGSNTYYVTVRAYNTAGAGPPSVTVNV
TTKKPPPSQPPVKVMWNTLNSKIILNWEQVKALENESEVTGYKVLYKRNRHSRPSVMETN
TTTVELSLPMNEEYFIQIKPFGEGGEGSSSRQITIPRIPGPNAIGSATKVSTLSALSTIA
LSFTARTSL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgctatggaaactgctggtgctgaagtcactcatggggtgcctggcagagagc
agtgtcctgcagagcccagtgttcaccaagcagcctggcagcattgtgtttcctgttgac
tcccaggaaaacaacagagacgtggtgttcagctgtgaggcccagggaagcccatctccc
ctttatcggtggaaactgaatggcactgcgatcactcccaaatcaggctcacactatagc
ctgtctggaggcaacctccgaatcagccatttaaacaaagaccaagatgctggaacatat
cagtgcctcgcctccaactcttttgggaccatcgtgagccgagaggccagtctaaccttt
gcatacttggggaacttcaagacccaccgaagaaactcagtgtcagttcgcgagggacag
ggggtggtgctgttgtgtggtcccccatctcactctggagatctgacattctcctggatt
tttaatgagtatccctcatttgtgaagcaggacacacgacgctttatctcccaggagacg
ggcaatctatacatcgctaaagtggagccttctgatgtgggcaactacacctgtgtggtg
actaatactgtcaccaaaaccagagtccagggcccgcccacgcctttggtgctccgcagt
gatggtataatgggtgaatacgagccgaagatcgaagttcagtttccagagattgtccat
gtagccaaaggattgacagtgaaactggaatgttttgcattaggaaaccctgtcccctct
ataaactggagtagagtggacggaatccccttttctaggaaagtggacgtgaggaaagcc
agcggcgtcctggaaatcccttatttccagcaggaagacgcgggcacatatgagtgtgtg
gcagagaactccagggggaagaacactgtaaaaggaaagctctcattctacgcccctcca
catctgatagagaaacctgaggatgtgcagaagcccattgacgactctctggtgtgggaa
tgcaaggccaccgggaagcccaagccctcctataggtggatgaagaacggagagaacctg
gagtcactggaggagcgcatacaagttgccaatggagcattgtcaatcagccggctgacg
ctgtccgacattggaatgtatcaatgtgtggctggaaacaaacatggggaggtatactcc
aatgcagagctcagagtcattgctgttgccccagatttctcccagaaccagctgaggagc
cccaccatggtgaaggagggaggagacgtgctgatcgagtgccggcccaagatgtccccc
tggggcgtgatctcctggaggaagggcagcgaggctcttcgagagagccacagagtttcc
attctggataacggaaacctccggatacagaattcaaccagaccagatgcaggcctttac
acatgtgtggcaagaaaccagtttggagtggcaagcagctccgggactctcatggtcaaa
gagccgaccattatcacaacggcaccgtccacactggacgtgactgtaggagagagcatc
gtgctgccgtgtcaggtgactcatgacccgtctctgaagctcgtgttcacctggttcttc
aacgagcagctgatccactttggcgaccacggcggatactttgaaaaagtgggcggtcag
cattccgctggggacatcatgattcggaacatccagctgagacacgcagggaagtacacc
tgtgcagtgcagaccaaggtggacagtatctccatcgcagcagacctggtagtccgaggt
cccccaggcccacctaccagcatccatgtagaagaaatcagtgacaccacagcctctctc
tcctggagaccggggcctgataatcacagtccaattaccacatacactatccaggccagg
acacccttctccctgggctggcaggctgtcaccacagttcctgaggtggtggggggccgc
agtctgacagctacagtaatagacctgagcccctgggtggaatatgagttcagagtcctg
gcaagcaatgccattgggaccggggagcccagtaaaccatccaaacaagcaaggacaaag
gagacatctccgaaggtcacaccagctaatgtgagcggaggtggaggcagtcgctcagaa
ttagtcatcacttgggagcctgttcctgaggagctgcagaacggaggagggtttggctat
gtggtggccttcaggccgtccggagccacaggctggatgcaggctgccgtgccctcatca
gaagcctccaaatatgtctttaagaacgagagcatccagcccttctcccccttccaagtg
aaggttggagtgtacaacaacgagggggaaggccctttcggacccgtcatcaccatctat
tctgcagaggaagagcctggcagagcgcccaccaggatccgtgccaagagtctgtctgcg
tctgagattgaggtttcatggaaagccctgccttggaacaccagtaagagaagagttcta
ggctatgagttgaggtactgggagaagagagagaaggaggaggcagccagtgtccagagg
acggtagggaaccagacgtcagccattatccgaggggtgagaggaagtaacacgtactac
gtcacagtgagagcatacaacacggccggggctgggcctcctagtgtcactgtcaatgtc
accaccaagaaaccaccgcccagccagcccccggtgaaagtgatgtggaacacattgaat
tccaagataatcctgaactgggagcaagtcaaggccctggaaaacgagtcagaggtcact
ggctacaaagtgctctacaagcgtaaccgacacagccgccctagtgtcatggaaaccaac
acaacgacggtggagctctccctgcctatgaatgaggagtacttcatccagatcaaacca
tttggggaaggaggagaggggagcagtagcagacagatcaccatccccagaataccaggt
cccaatgcaattggctcggcgaccaaggtctctactttatcagcccttagtacaatagca
ttgtctttcacagcgcgaacatcgttatga
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