Oncorhynchus tshawytscha (Chinook salmon): 112220813
Help
Entry
112220813 CDS
T05605
Name
(RefSeq) protocadherin alpha-C2-like isoform X1
KO
K16493
protocadherin alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112220813
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220813
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
112220813
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112220813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
112220813
NCBI-ProteinID:
XP_024238477
LinkDB
All DBs
Position
LG21:complement(7402394..7613752)
Genome browser
AA seq
1005 aa
AA seq
DB search
MAVAARCCCSITQNVPFTFYLVIFLFSGLTNAQIRYTIPEELENGAVVGDIVRDLGLDLR
KLSSRRIRITSDSARRYFNINHKNGKLSVSDRIDRETLCEFSGTCSLNLEVVVENPLEVH
NVEVEILDANDNSPQFPRDEYQLEISESAITGSRFPIEGAQDADDGSNSVRLYRLSNNEH
LALDSNKPVANSKQIELVLKKPFDREHTPSHQFILTAVDGGTPARTGTAKINVHVLDSND
NVPAFDNSVYKVKLLENSPKGALVIKLNATDPDEGTNGEVFYSFSSYTPERVRQMFSMDT
DTGEIRVKNNIDYEETNSYEMYIQAMDRGPSAVAVHCKVVVEVLDVNDNIPEIVLSSLSS
PVREDARADTVVALISVNDRDSAQNKQVTLEIQPGLPFKIKSFRNHYTLVTSAFLDRETI
STYNVTVTAIDGGTPALSSHMTIKVDVADVNDNPPRFEQTSYTVYMTENNAPGASMCVVK
ALDADTGENARITYTVLNDNNHGIPVASYVSIKPDTGEAYALRAFDFEKLREFHFQVKAQ
DGGVPPLSRVATVYVYIMDQNDHSPRIVHPPANGTRTTETLMKNAEAGALVTKVVAWDGD
AGQNAWLVYALEQITSELDLFKVHEHTGEIRTTRRVSEDNSTSFLLTVLVRDHGVPPLSS
TATINVHVMELPPKLTPDPKRIIRPHSPLLFSNVTLYLIVALSATTFVFLVTIVVLAIVR
CHAYCTQPGSCSPCCVSQKRVPEGGTSAGGGGGSLGRGGGGGGGGGQGQPNNNVALRRDL
KVEPHYIEVRGNGSMTKTYCYKTCMTATSGSDTFMFYNTGRPHSGTWGSGGYVTSQSGQS
QMFVRRLSMPDATAIQPKVPNSDWRYSASLRAGMQSSVHMEESSVMQGAQGVLVQNWPTV
SSAAGDAEGGEVSPPMGAGVDSNSWHFRYGAGGPGGPPQHLKPGEVPPEAFIIPGSPAII
SIRQQGGEDDKSDFISFGKKEEAKKKKKKKKEKKDKKDKGKDDDE
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggcggcgcgatgctgttgcagcataacgcagaatgtgccttttactttttat
ttggtaatttttctattcagtggccttacaaatgcacaaatacgatacaccattccggag
gagctggagaatggggctgtggtcggcgacattgttcgagatttgggtctggacctgcga
aagctctcttcccgacgcatccgaatcacctcggacagcgcaaggagatatttcaacata
aatcataaaaacggcaagctgtcggtgagtgaccgcatcgaccgagagacgctgtgtgaa
ttcagcggcacatgttccctcaacctagaggtggtggttgagaacccgctcgaggtgcac
aacgtggaggtggagattctggatgcgaatgacaactcgccacagttcccccgggacgag
taccagctggagatctcggagtccgctataacggggtcccggttccccatcgaaggcgcg
caggatgcagatgatggctcaaattcggttcggctctatcggctcagcaacaacgagcac
ctcgcgctggactccaacaagcccgtggcaaacagcaagcaaatcgagctcgtgctcaaa
aagccatttgaccgcgagcatacaccgtctcatcagttcatactgactgctgtcgacgga
ggcacccctgcgcgcacgggcacagccaaaatcaacgttcatgtcctagattccaacgac
aatgtgcccgcgttcgacaactccgtgtacaaagtgaaactgttagagaactcgcccaag
ggagctctggtgataaagttaaacgccacagacccggatgaaggcacaaacggggaggtg
ttttactctttcagcagttacaccccagagagggtgagacaaatgttctccatggataca
gatacaggagagatccgagttaagaacaacatagactatgaggagactaactcctatgag
atgtacatacaagctatggacaggggcccttctgcagtggccgtccactgtaaagtggtt
gtagaggttttggatgtgaatgacaatatcccagagatcgtgctgtcctctctgtccagc
ccagtccgtgaggacgctcgggcagacacggtggtggccttgatcagcgttaatgaccgg
gactccgcacagaacaaacaggtgaccctggagatccaacctggcctcccctttaagatc
aagtccttccggaaccactacaccttggtcacctccgccttcctagaccgggaaaccatc
tccacctacaatgtcacagtaaccgccattgacggagggaccccggccctctcctcacac
atgaccattaaagttgacgtggcggatgtcaatgacaaccctcctcgcttcgaacagaca
tcctacacggtgtacatgacggagaacaacgcgcccggggcctcaatgtgcgtggtgaag
gctctggacgctgacaccggggagaacgctcgcatcacctacaccgtcctcaatgacaac
aaccacggcatccccgtggcgagctacgtcagcatcaaacccgacacgggcgaggcctat
gccctgcgagccttcgactttgagaagctcagagagttccacttccaggtgaaagcccag
gatggtggcgtgccacccctcagccgcgtggcaaccgtctatgtttacatcatggaccag
aacgaccactcccccaggatagtccatcctccagccaatgggacgcggaccactgagacg
ctgatgaagaatgcggaagcgggggctctggtgaccaaggtggtggcgtgggacggggac
gctggtcagaacgcctggctggtgtatgccctggagcagatcacctccgagctggacctg
tttaaagtccacgagcacacaggggagatccgcaccacgcggcgcgtcagcgaggacaac
tccacctccttcctgctcaccgtgctggtccgtgaccatggcgtcccgccgctctcctcc
accgccaccatcaacgtgcacgtcatggagctgccgcccaagctgacccccgaccccaaa
cgtatcatcaggcctcacagcccactactgttctccaacgtgaccctctacctgatcgtg
gccctgagcgccaccacctttgtgttcctggtcaccattgtggtgctggccatcgtccgc
tgccacgcctactgcacccagcccggttcctgctccccatgctgtgtgtcccagaagaga
gtccccgaggggggcacctcggccggcgggggtggagggtcattgggtcgagggggtggg
ggaggtggaggagggggtcagggtcaacccaacaataacgttgctctgcggagagacctg
aaagtggagcctcactacatcgaggtgcgggggaacggctccatgaccaaaacatactgc
tataagacatgtatgacggccacgtcggggagcgacaccttcatgttctataacacgggc
cggccccacagtggcacctggggctccgggggatacgtcaccagccagagtggacagagc
cagatgtttgtgcgcaggctcagcatgccagacgcaactgcgatacagcccaaggtgccc
aattctgactggcgttactctgcttcacttagggctgggatgcagagctcagtgcacatg
gaggagtcgtcggtgatgcagggagcgcagggggttctggtccagaactggccgaccgtg
tctagcgccgccggagatgctgagggtggagaggtgtccccacccatgggagccggagtg
gacagtaacagctggcacttccgttacggcgccggtggtcccggaggacccccccagcac
ctgaagcccggcgaggtcccccccgaagccttcatcatccctggatcgcccgccatcatc
tctatccgccagcagggaggagaggacgacaagagcgacttcatcagcttcggaaagaag
gaggaggccaagaagaagaagaagaagaagaaggagaagaaggataagaaggataagggg
aaggatgatgatgagtag
DBGET
integrated database retrieval system
