Oncorhynchus tshawytscha (Chinook salmon): 112220822
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Entry
112220822 CDS
T05605
Name
(RefSeq) testican-1 isoform X2
KO
K08136
testican
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112220822
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Others
112220822
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GFIT
Motif
Pfam:
SPARC_Ca_bdg
Thyroglobulin_1
Kazal_2
Kazal_1
EF-hand_7
Motif
Other DBs
NCBI-GeneID:
112220822
NCBI-ProteinID:
XP_024238485
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Position
LG21:complement(7823865..8120912)
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AA seq
470 aa
AA seq
DB search
MLFCLLPFAALLLRAEGRRGGTVVGNKNIGHAMDNDKWLSTVSQYDKDRYWNKFRDDDYF
KSYGPAKPINQETEARPSRHGEPGTKAHSNPGKRRTEEAPDATKDPCLKVRCPPHKVCFS
HDYQTAICTNTNHKQPRHSVKPRKERLTHKHWAGAGAHGKCGPCPVIHPSPVCGSDGHTY
SSKCKLEFQACTSGKSIALKCEGPCPCLPGQELVKPHRDKTEKTVCSDGDLHSLASRLKD
WFGVLHLDANRDLKSSANSDSAAGRFDTSILPICKDSLGWMFNKLDMNYDLLLDQSELSA
IYLDKYELCMKPLFNSCDSFKDGKLSNNEWCYCFQKPDGLPCQNEMNRIQTQGRRKSLIG
AYIPRCSEEGYFKSTQCHGSTGQCWCVDKYGNEIAGSRKQGNPTCEEDQETSGDFGSGGG
VLLLDDQEEEPPRSGRSRQKQRRGRIHPRGAIEDDEDEEDDKDDEIGYVW
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctgtctgctgcctttcgcggctctcttgctgcgcgcagagggcaggcgcggg
ggaacggtggttggtaacaaaaacattggccacgcgatggacaacgacaaatggctcagc
accgtgtctcaatacgacaaggacagatattggaacaaattcagagatgatgactacttc
aaaagctatggtcctgctaagccaatcaaccaagagacagaggcgaggcccagcagacat
ggggaaccaggaaccaaagcccactccaacccaggaaagaggagaacagaagaggctccg
gacgccactaaagacccgtgtctgaaggtgcgctgccctcctcacaaggtgtgtttcagc
cacgactaccagacagccatctgcaccaacaccaaccacaagcagcctagacacagtgtg
aaacccagaaaagaaagattgacccacaaacactgggcaggagcaggggcccatgggaag
tgtggaccgtgccctgtcatccaccccagccccgtgtgcggctctgacggccacacctac
tcctctaagtgtaagctggagttccaggcgtgcacatcagggaagagcatcgctctgaag
tgtgagggaccgtgcccatgtctgcctggtcaggaactggtcaaaccacacagagacaag
acagagaagaccgtctgcagtgatggggacctgcatagcctagcatccagactgaaggac
tggtttggagttctccaccttgatgccaaccgagacctcaaatcctctgccaactctgat
tcagcggcaggacgttttgacaccagtatcctgcccatctgtaaggactccctgggttgg
atgttcaacaagctggacatgaactatgacctcctgctggaccaatcagagctcagtgcc
atctacctggataagtatgagctgtgtatgaagcccctgttcaactcctgcgactccttc
aaggacgggaaactgtccaacaacgagtggtgctactgcttccagaaacctgacggtctg
ccctgccagaatgagatgaacaggattcagactcagggtcgacggaagagtctcataggg
gcctatattccacgctgttctgaggagggttactttaagtcaacccagtgtcatggcagt
actgggcagtgttggtgtgtggacaaatacggcaacgagatcgccggctccagaaaacag
ggcaaccccacctgtgaggaggatcaagagacctcgggggattttggcagcgggggtggc
gtccttctccttgacgaccaggaggaggagccacctcggagtgggaggagccggcagaag
cagaggcggggccggatccatcccagaggggccatcgaggatgacgaggacgaggaagat
gacaaagatgacgagattggctacgtctggtag
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