Oncorhynchus tshawytscha (Chinook salmon): 112220841
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Entry
112220841 CDS
T05605
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04210
Apoptosis
otw04218
Cellular senescence
otw04620
Toll-like receptor signaling pathway
otw04621
NOD-like receptor signaling pathway
otw04622
RIG-I-like receptor signaling pathway
otw04623
Cytosolic DNA-sensing pathway
otw04625
C-type lectin receptor signaling pathway
otw04920
Adipocytokine signaling pathway
otw05132
Salmonella infection
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112220841 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112220841 (nfkb1)
04218 Cellular senescence
112220841 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112220841 (nfkb1)
04621 NOD-like receptor signaling pathway
112220841 (nfkb1)
04622 RIG-I-like receptor signaling pathway
112220841 (nfkb1)
04623 Cytosolic DNA-sensing pathway
112220841 (nfkb1)
04625 C-type lectin receptor signaling pathway
112220841 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
112220841 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112220841 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
112220841 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112220841 (nfkb1)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
112220841 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
112220841
NCBI-ProteinID:
XP_042158984
LinkDB
All DBs
Position
LG21:complement(8503822..8546827)
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AA seq
911 aa
AA seq
DB search
MAEEEAYPPHPQYYDIEPIWDPLNFTPMSLTNSLRTADGPYLEIIEQPKQRGFRFRYGCE
GPSHGGLPGASSEKNRKSYPQVKICNYQGLARVVVQLVTNSKDAHLHAHSLVGKQCDKGI
CITDQQPKDSSISFPNLGILHVTKKNVIKTLEDRMTEAYRVGYNCGIVIHPEIDAIQGEV
RIPRELTDHQRSMICSAATKQAKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVISDPIFDS
KAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGLTWEAFGDFSP
TDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQRK
RQKTLPNFQDYSGQGGAGGMYRGPGGGGSATGGGPGSGGGGYFQAYSTYNNYGTGYSAGF
SPGMSGGGAGIKHATQGRAEDSGDDCDMGDDPSSGAVVADRAQSEEDASAGETKCMLEAR
LVDVAERQAEALFHYAVTGDVRYLLAPQRHLMTAQDENGDTGLHLGVIHSQTDVVRSLAQ
VLSVLPGEEVLNMRNDLYQTPLHLAVITQQKEAAEALVLAGADVTLSDRHGNTALHLATQ
QKEGGMVGFLLRHREVVELVDLPNTAGFCSLHLAVLANSLCSLRDLLVSGGNVEGQERSC
GRTALHLATELDNVSLAGCLLLEGNADVDCCTYNGSSPLHIAAGRGSVKLTALLMAAGAN
PHKENFEPLFFREDDCCVEEEQDEGYIPGMTPLNMAATPEVLEILNGKEYKPETTIPVFI
PPQGDMRSLGSDTKRALCQALECQGGSWESLANTLGLGILNSAFRLSPSPASTLLDSYEV
SGGMVMDLLEGLRMVENSTALTVLQGALCGTEQAPLAPRSTTELLGRVQDLKLDGQEDSG
VCDSGVELSTA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggaggcttacccccctcacccacagtactatgacatagagccaatatgg
gatcctctgaattttactcccatgtcactcaccaactcactccggacagcagatggaccc
tacctcgaaatcattgaacagcctaaacagcggggcttcaggttccgttatgggtgtgag
ggaccctctcacggtgggcttccaggggcctccagcgagaagaacaggaagtcatatccc
caggtcaagatctgtaactaccaggggttggcacgtgtggtggtacagctggtgaccaac
tctaaagatgcccacctccatgcccacagtttggtgggcaagcagtgtgacaaaggcatc
tgcatcacagaccaacagcccaaagactccagcatcagtttccccaacctgggcatcctc
catgtgaccaagaagaatgtgattaagacactggaggaccgcatgactgaggcctacagg
gtgggctacaactgtggcattgtcatccaccccgagatagacgccatccagggagaggtt
cgcatcccccgggagctcactgatcaccagagaagcatgatctgcagtgcagcaaccaag
caggctaaagagatggacctaagcgtggtgcgcctcatgttcacagccttcctcccagat
agtgacgggggcttctcccgtagactggaccccgtcatatcagaccccattttcgacagc
aaagctcctaatgcatccaacctgaagattgtgcggatggaccgcacagctggctgtgtg
acaggaggagaagaggtctacctgctctgtgacaaggtccagaaagatgacatccaggtg
cgcttctatgaggatgacgagacagggctgacatgggaagcctttggggacttctccccc
actgatgtccatcgacagtttgccattgttttcaagacccccaaatacagagacctgaac
ctccagaagcccacctcagtgtttgtgcagctgaagcgtaaatcggacaacgagacgagc
gagcccaagcctttcacctaccacccacagatcatagataaggaagaggtgcagaggaaa
agacagaagaccctgcctaatttccaggactacagcggccaaggtggagcagggggcatg
taccggggaccagggggaggaggctccgctacagggggaggacccggctcagggggagga
ggttacttccaggcctattcaacctacaataactacggcaccggctatagcgctggcttt
tcccctggcatgagtggtggcggggcgggcattaaacatgctacacagggcagagcggag
gacagcggtgatgactgcgacatgggtgatgacccgtcctctggggcagtggtggcggac
cgagcccagtcggaggaggatgcctctgctggggagacaaaatgcatgctggaggctagg
ctggtggatgtggctgagaggcaggctgaagccctcttccattacgccgtcactggagac
gtccgctacctgctggctccacagcgccacctcatgacggctcaggacgagaacggcgac
actggtctccatctaggggtgatccacagccagacagacgtagtcaggagtctagcccag
gtgctctctgtcctgcctggagaggaggtcctcaacatgaggaatgacctctaccagact
cctttgcacctagcggtgataacccagcagaaggaggcggccgaggccctcgtattggct
ggggctgatgtcactctgtctgatcgccacggaaacacagctctacacctggccactcag
cagaaggagggagggatggtaggatttctactaagacacagagaggtggtggaactagtg
gacctccccaacacagcaggattttgctccctccacctggctgtgctggccaatagccta
tgttccctcagggacctcttggtgagcgggggcaatgtggagggccaggagaggagctgc
ggccgcacggcactccacttggccactgagctggacaacgtctccctggcaggctgcctg
ctactggaggggaatgctgatgtggactgctgcacctacaacggctccagccctctccac
atagcagcaggccggggctctgtcaaactgaccgctctcctcatggctgcaggtgccaat
cctcacaaagaaaactttgagcccctgttcttcagagaggatgactgctgtgtggaagag
gagcaggatgaaggctacatcccagggatgactcctcttaacatggctgccactcctgag
gtgttggaaattctgaatggcaaagagtacaagccagagaccaccatcccagtcttcatc
ccccctcaaggcgacatgcggagcctgggctcagacacaaagcgggcattatgccaggcc
cttgagtgccagggggggagctgggagagcctggcgaacacgctggggctgggcatcctc
aacagcgccttcagactcagcccctcccccgccagcacactgctggacagctacgaggtg
tccgggggaatggtcatggaccttttggagggactcaggatggtggagaactccaccgcg
ttgacagtactgcagggggcactgtgtggaacggagcaggctcctctagctccccgaagc
accacagagctcttaggacgtgtccaggatctgaagctggacggacaggaggacagtggc
gtgtgtgacagcggggtggagctctccacagcgtga
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