Oncorhynchus tshawytscha (Chinook salmon): 112220870
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Entry
112220870 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor 6-like isoform X1
KO
K05729
Rho guanine nucleotide exchange factor 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04518
Integrin signaling
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04518 Integrin signaling
112220870
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112220870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112220870
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112220870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF67_u2
betaPIX_CC
RhoGEF
SH3_2
SH3_9
CH
SH3_1
RhoGEF67_u1
PH
CENP-Q
HAUS-augmin3
IcsB_M
Motif
Other DBs
NCBI-GeneID:
112220870
NCBI-ProteinID:
XP_042158990
LinkDB
All DBs
Position
LG21:complement(9280716..9313615)
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AA seq
772 aa
AA seq
DB search
MNPEEQTVTWLISLGVLNSPKKNIADPEEFLKTSLKDGVVLCKLMERLVPGSVPKYCQDP
RNEADCIANIKEFLRGCTFLKVEGFEPECLYTGENFNKVLTTLLGVNFATQDCGTERSCP
QSGTSAPSQSTSSHTLSSSKSLRRPSKPVEMSENGGGGLLLVKARFQFKQNNEDELSFNK
GDLIGVSRQEEGGWWEGTLNGKTGWFPSNYVREVKPCDKPVSPKATQLTKNYYSVVVQDI
QEHEREFVKELQTVLSSYLRPLLASDKLSVTDSGILGANLEEILTFQQGLVLALEECTKV
PESQQRVAACYLNLIGQIRMLYLSYCSSHPSAVCVLTDHSEELGTFMESQGASTPGILTL
TTSLSKPFMRLDKYPVLLQELERHVEEAHPDYSDILKATVAFKSLVTQCQDLRKRKNLEL
QILSEPVRGWEGDGMKSLGHVAYMSQVHMQNGTNEEKEERYLMMFPSVLVMLSASPRMSG
FIYQGRLPLTGSTVSRQTDDTENGHYAFDITGSMFDRVTVICSNSQELQDWLDHLNTYTK
GGSPVGTIIRNEGGKPLSMVGTPTHQSHLPIFITPSQGNRGPLEPPKTTKPWSLSCLRPA
PPLKPSAALGYKERMSYILKDSGKSPRPIKKFLPKRKTERKPSDDEFLLRKSTAALEEDA
QILKVIESYCTGASLHQNNTVVRKDSVPQVLLPEEEKMMVEEMKNNGQTIIEEKSLVDAV
YALKDEVHELKKESKWIKQCLEDEQKSRKELERVVRKLAKQKNDCAWEDGDH
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagaagagcagacggttacgtggctgatatcattaggggtacttaattcaccc
aagaagaacatagctgacccagaggaatttcttaaaacatctctgaaagatggggtcgtc
ctgtgcaaacttatggagcggctcgtgcccggctctgttccaaagtactgtcaggatccg
agaaacgaagccgactgcatcgctaatatcaaggagtttttgagaggatgtacattcttg
aaagtagagggatttgaaccagagtgcctgtacactggagagaactttaacaaagtgctg
accactctgctgggagtcaactttgccacccaagactgtggcactgagaggtcatgtccc
cagtccggcacatccgctcctagtcagtccacctcttcccacacactatcctcatccaag
tccctgcgcagaccatccaaaccagtggagatgtcggagaacggcgggggcgggctgctg
ctggtgaaggcgcgcttccaattcaagcagaataacgaggatgagctgtccttcaacaag
ggagacctgatcggtgtgtcgcgccaggaggagggcggctggtgggagggcacgctcaac
ggcaagacgggctggttccccagcaactatgtccgcgaggtcaagccctgcgataaacct
gtgtctcctaaagccactcaacttaccaagaactactacagtgtggtggtgcaagacatc
caggagcatgagcgggagtttgtcaaggagctgcagacagtcttgagctcttacctacga
cctctactggcaagcgacaagctgagtgttacagacagtggcattctgggcgctaacctg
gaggagatcctcaccttccagcagggcctggttctggctctggaggagtgtaccaaggtt
ccagagagccagcagcgagtggctgcctgctacctcaacctgattggccagatcaggatg
ctgtacctgtcctactgctccagtcacccttcagctgtctgcgtactcactgaccacagt
gaggagctgggtacgtttatggagagccagggggccagtacgccaggcatcctgaccctg
accaccagcctgagtaaacccttcatgaggctggacaagtaccccgtcctgctgcaggag
ctggagagacacgtggaggaggcccacccggactacagtgacatcttgaaggcaacggtg
gcctttaagagcttggtgacccagtgtcaggacctgcggaagcgtaagaacctagaacta
cagatcctgtcagagccagtgagaggctgggagggagacggaatgaagtctctgggtcac
gtggcctacatgtcccaggtgcacatgcagaatgggaccaatgaggagaaagaggagcgc
tatctcatgatgtttcccagtgtgctcgtcatgctgtctgctagtccgcggatgagcggc
ttcatataccagggaaggctgccactgacgggctccacggtctccagacagacagacgac
acagagaacggccactatgcctttgatatcacagggagcatgtttgatcgtgtcacagtg
atctgcagtaactcccaggaactgcaggactggctggaccatctcaatacctacaccaaa
ggcggaagccctgtgggcaccataatcaggaacgagggggggaaaccgctcagtatggtg
ggcactcccactcaccagtcccacctgcccatcttcatcacccccagccagggcaaccgg
ggaccactggagccccccaagaccaccaaaccctggtccctgagctgcctgcgtcctgcc
ccgcccctcaagccctctgctgcactgggctacaaggagagaatgtcttatatattgaag
gactccggtaaaagtccgaggcccattaagaagttcctcccgaaacgcaaaacggaacga
aaaccttccgacgatgagttcctcctgcggaaaagtacagctgctctggaggaggatgca
cagattctgaaggtgatcgagtcctactgcacaggggccagcctgcatcagaacaacacg
gtggtgaggaaagattctgtccctcaggtcctgctgccggaggaagagaagatgatggtg
gaagagatgaagaacaacggtcagaccatcatagaggagaagagtctggttgatgcggtg
tacgctttaaaggatgaggtccatgaattaaagaaggagagtaagtggatcaagcaatgt
ctggaggatgagcagaagtctcgtaaggagctggagagagtggtcaggaagctggccaag
cagaagaacgactgtgcctgggaggatggagaccactga
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