Oncorhynchus tshawytscha (Chinook salmon): 112220957
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Entry
112220957 CDS
T05605
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112220957 (ssrp1a)
03036 Chromosome and associated proteins [BR:
otw03036
]
112220957 (ssrp1a)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
112220957 (ssrp1a)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
112220957 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
Motif
Other DBs
NCBI-GeneID:
112220957
NCBI-ProteinID:
XP_042159028
UniProt:
A0AAZ3QQ63
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All DBs
Position
LG21:complement(12761901..12793786)
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AA seq
712 aa
AA seq
DB search
MGDTLEFNEIYHESKGSWNDGRLRFSKQNVVYKSSKTGKVDNIPAAELSVATWRRVCLGH
GIKLATSNGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGPADEGADPVE
AFAQNVRSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPSKDQRQMFFVISLDPPIKQGQTRYHFLILHFSKEEELKLTLNMSEEEVEKRYE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLHIKNRGFKEKKAKNNEYSDSDDDQHDAYLERMKAEGKIREEGDGSNDSDEETDES
FNPGEESDVAEEYDSNASESDSGSGGDGSGDEGKKKPAKKAKVVKEKRERKPRKEKKQKD
TNAPKRPMSSYMLWLNSSRERIKSENPGISITEISKKAGEMWKQIGKEDKEEWDGKADEA
KKTYEKAMKEYRESGGGSSTPAKKESKKKAGGKKEDKKRKSGGGEKEKEQGGNDSFKSRE
FISSEESSSDGERKKAKKAKKAKGKPQSRDKESEEEEEEAMTTPPSSEEDSD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgagatctaccatgaatccaaggggtcctggaacgac
ggtcgtctgcggttcagtaagcagaatgtggtgtataagagcagtaagaccgggaaggtg
gacaacatcccggcagcagagctgtctgtggccacatggaggcgtgtgtgtctgggacac
ggcatcaaactggcaaccagcaacggccatgtctacaaatacgacggcttcagagacacg
gattatgagaggatctctgagttcttcaaggccaactacaaggtggagctgacagagaag
gacatgtgcgtgaaaggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgacgtgaatgacagctccgtgtttgagatccccctggccagcgtgtcccagtgtgcc
accgggaagaacgaggtgacgttggagttccaccagaacgatgacgctgaggtctctctc
atggaggtccgtttctacgtcccccccggccccgcagacgagggggcagaccccgtggag
gcgtttgcccagaacgtgcggtctaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacacccaggggcaggtatgatatcctcatctac
cccgccttcctgcacctccatggtaagacgtttgactacaagatcccctacaccaccgtg
ctgcgtctcttcctgctaccaagcaaggaccagagacagatgttcttcgttatcagtctg
gacccgcccattaagcagggacagacgcgttaccacttcctcatcctgcacttctctaag
gaggaggagctcaagcttaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaagctcagcaagaacatgtcaggctctctctatgagatggtcagcagggtgatgaag
gctctggtcaacaggaagatcactgtgcccggaaacttccagggtaacacccctggggcc
cagtgtataacgtgttcctacaaggctcagtccggcctgctttacccgctggagcgaggc
ttcatctacgtccacaagccccccgttcacctgcgcttcgaggagatctccagtgtcaac
ttcgccagaggcaccaccaccacgcgctccttcgacttcgaggtggagaccaagcagggg
aaccagttcaccttcagcagcatagagagggaagagtacgggaagctgtttgactttgtc
aacgccaagaaactccacatcaagaaccgaggattcaaggagaagaaggctaagaacaac
gagtacagtgactcagacgacgatcagcacgatgcctacctggagaggatgaaagccgag
ggcaagatcagagaggagggagacggcagcaacgactcagacgaagagaccgatgagtct
ttcaaccctggagaggagagtgatgtcgctgaggagtatgacagtaacgcgtcggagagc
gacagcggcagtggaggggatggcagcggtgatgagggaaagaagaaacctgcaaagaag
gccaaagtcgtgaaagagaagagggagaggaaaccacgcaaagagaagaagcagaaggac
acgaacgcccccaagaggccgatgagttcctacatgctgtggctcaactccagccgcgag
cgcatcaagtctgaaaaccccggaatctccatcacagagatctccaagaaggcaggagag
atgtggaaacagattgggaaggaggacaaagaggaatgggacgggaaggcagacgaggct
aaaaagacctatgagaaagccatgaaggaatacagagagagtggtggaggctcctccaca
ccagctaagaaggagagcaagaagaaggcgggaggcaagaaggaggacaagaagaggaag
tctggtggaggagagaaagaaaaggagcaaggagggaacgacagctttaagagccgagag
tttatctccagcgaggagagttcatctgacggtgaacgcaagaaggccaagaaagccaag
aaggccaaaggcaaaccccagagcagggacaaggagtctgaggaggaagaagaggaagcg
atgaccacaccccccagctctgaagaggactctgactga
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