Oncorhynchus tshawytscha (Chinook salmon): 112220988
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Entry
112220988 CDS
T05605
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112220988 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112220988 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112220988 (abca1b)
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112220988 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
112220988
NCBI-ProteinID:
XP_042159050
LinkDB
All DBs
Position
LG21:complement(13652803..13698365)
Genome browser
AA seq
2305 aa
AA seq
DB search
MRSRVEMSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHEC
HFPNKAMPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILL
YSQNDRNLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQIIE
ADVNLEKVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAES
HFLHNLDFLKPIRKDVRTDPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFL
TENATSSPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAY
DNTSTPYCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELG
VLRELGGMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSQLAGSEWTVEDVSNFL
TKHSQDTHPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLD
DRKFWAGIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRY
IWGGFSYLQDIVEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAW
MYSVAIIIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGN
LLPYSDPGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQ
DYVGFGAKIVASLLSPVAFGFGCEYFALFEEQGIGIQWYNLFNSPMEEDDFSLTTAIIMM
YFDSFLYMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGENRKTDFSQNKRRSCEAVC
IEEEPAHLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILT
GLFPPTSGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQ
VKSEIEQILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR
RGIWDLLLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYL
TLVKKGPEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASIC
ESAFVPPDVSLISSLIFKHVPAARMVENLGHELIYVLPYSAAKDGAFVELFKDMDNHLHD
LGISSYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSC
LRPQIDDDNNEHNDSEADPESRETDFLSGSDGKGSYKVTGWSLKRQQFVALIWKRFLYAQ
RSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDAST
QRLLSALTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSP
ACACSCDGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSL
KNKIWVNEFRYGGFSLGARSTNVLPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFI
NGLDTKNNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKE
QLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTA
NFIWDMCNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFK
IPSTAYVVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLID
MVKNQAMADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINL
HTKLPPVGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGEC
FGLLGVNGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELL
TGREHLEFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIG
GPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR
FRCLGSVQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLP
SSLTSLAHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAV
VDTTPLSSRQAEEKLAEERLKESLV
NT seq
6918 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccagagtagagatgtccatctcaactcagctgggcttgttgttgtggaagaac
tttacctacaggagaaggcaaacgctccaactgctgattgagatagtatggcccctgttg
atcttcttcattttgatatcagtgagactgaactaccctccgtacgaacaacatgaatgt
catttccccaacaaggccatgccctcggcgggcaccctgccctggatccaaggcatcatc
tgcaacgccaacaacccctgcttccgcaaccccactcctggagagtcccccggggtcgtg
ggcaacttcaacgagtccataatctctcgtctgttctccgatgccaagaagatcctgctg
tacagtcagaatgaccggaatctggatggctttaaaggcctcatccaagccctgaagaca
ctacaggccaacaccaaaggattcaagctgaaggatttcctccacaacaatgagaccctg
tccactttccttctgcgaaacgcctccttctcggaacacgccgtgcgccagatcattgag
gccgacgtgaacttggaaaaggtgctggtcaaaggcttcggtgtccacctgagggacttg
tgcagcagcaacggcaccagagtagaggactttgtgaccatcacagacagcaaggtgtcc
agtctggtccagaagatgctctgcgtgtccccaggctcctggctcaaccaggcagaaagc
cacttcctccacaacctggacttcctcaaacccatacggaaagatgtgaggactgaccct
gaagccgtccagcaggtggccaaggctacagacaaactcctggagagcctgggctccctg
gccttggagctggccagcatgaagagttggagagacctgcgtaacgagatcatcttcctc
acggagaacgccacatcctcccccagccacatgtaccaggctgtgtcgcgcattgtctgt
ggccatcccgagggtggcggactaaagatcaagtccctcaactggtacgaggacaacaac
tacaaggctctgttcggcaaccacaacacaaccaacggggaggagcccatctctgcctac
gacaacacatccactccatactgtaacgctatgatgaggaacatggagtccagccccgtg
tccaggatgatctggcaggccctgaagcctctgctcatgggcaagatcctgtacaccccc
gacaccccagccacacagaagatcatccacgaggtgaacagaacattccaggagttgggg
gtcctcagagagctggggggcatgtgggaggaaattaagcccaaggtctggaccttcatg
gagagcagcgaacacatggacctagtaaggaccctattgaagaacaatggcactggcagc
ttcttcacctcccaactggcgggctcagagtggactgtggaggacgtctccaacttcctg
accaaacattcgcaggacacgcatccccacggtacagccttcacctggagggaagtcttc
aacgagacggaccaggccatcatgagcatatcccgcttcatggagtgtgtaaacctggat
aagatggagcccgtggccaatgaggaaaggatggtcaacaaatccatggcgctcctggac
gataggaagttctgggcggggattgtgtttccagatattgaggccaacagctctgaactg
ccggccaacgtcaactacaagatccgcatggacatcgataacgtggagcgcaccaacaag
atcaaagacggatattgggaccctggtcctcgtgctgacccatttgaggacctgcgctac
atctggggtggcttctcttacctccaggacatcgtcgagcatagcatcatcacagcagta
actggcgtcaaggagaagacgggagtctacatccaacagatgccctatccctgctacgtg
gacgacatcttcctgcgggtgatgagtcgctccatgcccctcttcatgaccctggcctgg
atgtactctgtggccatcatcatcaagagcgtggtgtacgagaaggaggcaaggctcaag
gagaccatgaggatcatgggattggacaatggcatcctgtggttcagctggttcatcagc
agcctcatccccctgctaatttctgccggcctgctggttgtgctgctcaagatggggaac
ctgctgccctacagtgaccccggcgtcatcttcctgttcctgggttcctttgccgtggta
accatcatgcagtgcttcctcatcagcacaatgtttgcccgtgccaacttggcggcggca
tgcgggggcatcatctacttcaccctctacctgccctacgtcctctgtgtggcctggcag
gactatgtgggctttggggccaaaatagtcgctagcctgctgtccccagtggcctttggc
tttggctgtgagtactttgccctgttcgaagagcagggcatcggcatccagtggtacaac
ctgttcaatagccccatggaggaggacgacttcagcctgaccaccgccatcatcatgatg
tacttcgactccttcctctacatggtgatgacctggtacatcgagtccgtcttccctggt
cagtatggtattcccaggccctggtatttcctcttctccaagtcctactggtttggagaa
ggggaaaacaggaagactgacttcagtcagaacaagagaaggagctgtgaagctgtctgt
atagaggaagagccagcccacctgaaaactggtgtcttcatagagaacctagtcaaggtg
taccggcacgggaagaagctggctgtggatgggctgactctgggcttctacgaaggacag
atcacctctttcttgggccacaacggagcagggaaaaccaccactatgtcgattctaacg
ggactgtttccgcctacctctggcactgcttacatcatgggaaaagacatccgatcggag
ctgagtgctattcgacagagtctgggtgtttgtccacagcacaacgttctcttcagcatg
ctgaccgttgaggagcacatctggttctatgctcgcctgaagggtctatctgaggaacag
gtgaagtctgagatcgaacagatcctgatagatactggcctgccgcacaaacgcacttcc
aggaccagcacactgtctggagggatgcagaggaagctctctgtggctctggcctttgtc
ggggggtcaaaggttgtgattctggacgagcccactgccggggtcgacccctacgcccgc
aggggcatctgggacctcttgctccaatatcgtctaggtcgtaccatcatcctctccacc
caccacatggacgaggcggacatcttgggcgaccgcattgccatcatctcccacggcaag
ctgtgctgcgtgggctcctccctcttcctgaagaaccagctaggtacaggctactacctc
accctggtcaagaagggcccagaacctttcctcagctcctgccgcaattcctccagtacc
gtctccttaactaagaaggaggaggattgtccctctgagagcagctctgacgcaggcctt
ggcagcgaacacgagagtgaagtagctaccatagaaactgctcaggcagcttccatctgt
gaaagtgccttcgtgccccccgacgtctccctgatctccagcctgatcttcaagcacgtc
ccggccgcccgcatggtggaaaaccttggccacgagctcatctacgtcctaccctacagc
gccgccaaggacggagccttcgtggagctcttcaaggacatggacaatcacctccatgac
ctgggcatatccagctatggtgtctccgacaccaccctggaagagattttcctgaaagtg
gcagaggacaacggagttgacacagaagttccctcagacggtacactccccctgcgcaga
cgtcgtagaaatcatgcctttggtggaggaaatgccttcggtggagaccaccagagttgc
cttagaccccagattgatgacgacaacaatgaacataacgactcggaagcagacccagaa
tccagagagacagacttcttgagcggctcggacggtaaaggctcctacaaggtgacggga
tggagtctgaagaggcagcagtttgtggccttgatttggaagaggtttctgtacgctcaa
cgctccagaaaaggtttctttgctcagattgtactccctgctgtgtttgtgtgcattgcc
ctggtcttcagtctcatcgtcccaccttttggaaagtaccccagtctggagctgcagcca
tggatgtatgaagaacagtccctcttcatcagcgatgacgcccctgaagacgctagcaca
caacggttattgagtgccctcaccgaaggacctgggtttggaacgcgctgcatggaagga
cagcccatacctgacactccctgtacgatgggtgacgaagactggtccataccggaggtc
ccagagacccttctggaactcttccgcacaggtaactggaccatggaggagccgtcccct
gcatgcgcctgcagctgtgacggccgcaagaaaatgctccctgagtgtcctgctggagcc
ggaggactgccaccccctcagatgaagatcagtgagacagacaccctgcaaaatctgacc
aacagaaacatctctgactatctggtgaagacctatgcagagatcattgggaaaagtttg
aagaacaaaatctgggtaaatgaatttaggtacggtggcttctcattgggtgccaggagc
accaacgtcctccccgcagctgacgaaattgacgacgccatcgctcgagtgaggaagatt
tttgaattggagaagggtgcagccgcagaccgattcctggagagcttgtctagcttcatc
aatggtctggacaccaagaacaatgtcaagatttggttcaacaacaagggatggcacagc
atgggagccttcctcaacgtgatgaacaacggcatcctgcgctccaacctgccccctggc
aaggaccccagcaagtttggcatccgcgccttcaaccacccgctcaacctcaccaaggag
cagctgtcccaggtggcgctgatgaccacctcagtggatgtcctggtgtccatctgcgtg
atctttgccatgtccttcgtcccagccagcttcgtagtcttcctcatccaggagagagtg
agcaaggccaagcacatgcagttcatcagcggcgtgcagcccctgctttactggacggcc
aacttcatctgggatatgtgtaactacatcgtcccggcaacgctcgtcatcatcatcttc
gtctgcttccaacaaaaggcctatgtgtcgtccaccaacctgccagtgctggccctgcta
ctgctcctctatggctggtctatcactcccctgatgtacccggcatccttcttctttaag
atccccagcacggcctacgtggtgctgacctctgtcaacatcctcatcggcatcaacggc
agcatctccaccttcgtcatggagctcttcggagacaacgaaattgggggtatcaacaac
atcctgaagaacgttttgctgatcttccctcacttctgtcttggccgaggtctcatcgac
atggtgaagaaccaggccatggccgacgctctggagagatttggtgagaaccgcttccga
tcccctctggaatgggacatggtgggcaagaacctgtttgccatggccgtggaaggagtg
gtcttcttcatcatcaccgtccttttccagtaccgcttctgcatcaagcccattaacctg
cacaccaagctccctccggtgggtgaggaggacgaggacgtggccagagagaggcagagg
atcgtcaacggactgggacacggagacatcctggagctccgacagctcaccaaggtctac
aagaggaagcaaaagccagttgtagaccgcctgtgtgtgggcatccctcctggagagtgc
tttggcctcctgggtgtgaacggagcaggaaagaccaccacattcaaaatgctgacagga
gactccatggtcaccagtggagaagctttcctggctggaaaaagtatactgcgggagata
gacgaagtgcaccagaacatgggctactgtccccagtttgacgccatcaacgaactgctg
acaggcagagagcacctggagttctacgccgtcctgcgtggagtgcccgagaaggaagtg
tgtgaggttgctgaatggggcatccgtaagctgggcctagtaaagtatgtggacaaggca
gcaggaagctacagcggaggaaacatgaggaaactctccacggccatggccctaatagga
ggaccacccgtcgtgttcctggacgagcccactactgggatggaccccaaagcgcgcagg
gccttatggaactgcatccacagcgtcatcaaggagggacgctccgtggtgctcacctcg
cacagtatggaggaatgtgaggccctgtgcaccagaatggccatcatggtcaacggcaga
ttccgttgcttggggagcgttcagcacctaaagaataggttcggagacgggtacaccatc
atcctgcgtgtggcgggggcggaccctgacctgccgccggtgatgaagttcattgagagc
gagctaccgggcagcaccctgaaggagaagcacaggaacatgctgcagtaccagctgccc
tcctctctcacctccctggcacacatcttcagcatcctggccaagaacaaggacctgctt
cggatagaagactactctgtgtcgcagaccacactggaccaggtgtttgtgaactttgcc
aaggaccagagtgacgattaccactcaaaagacaattcagttaagcgcaaagaggcggtg
gtggacactaccccgctcagctcgcggcaggctgaagagaagctagccgaggagaggcta
aaggagagcttggtgtga
DBGET
integrated database retrieval system
