Oncorhynchus tshawytscha (Chinook salmon): 112221003
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Entry
112221003 CDS
T05605
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112221003
09122 Translation
03013 Nucleocytoplasmic transport
112221003
03015 mRNA surveillance pathway
112221003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112221003
03041 Spliceosome [BR:
otw03041
]
112221003
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
112221003
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
Cap binding complex
112221003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
Dynein_AAA_lid
AAA_13
Vfa1
FapA
GBP_C
EMC3_TMCO1
RRF
DUF1281_C
PIN_8
tRNA_bind_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
112221003
NCBI-ProteinID:
XP_024238807
LinkDB
All DBs
Position
LG21:complement(14078747..14091714)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGVQSHKRRRTSEPVEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYAVLSSLPWV
GKELDEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQIWTAEKPHPQEEYLDCLYAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKSCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYVRLDTMNTICIDRLLNWFSHH
LSNFQFRWSWDDWVDCLALDAVKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSGLIPAD
PIFFYKYQDEANSALPGYAVAIAVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWKNHPQM
VSVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaagacggcacagtgacggagatgatggtgtccagtctcacaaaagaaggaga
acatctgagcccgttgagattgaggatcgcctggaatcactgatatgtcgggtgggagaa
aagagtacctcttccctggaaagcaacttggaaggtctcgcaggtgtattggaagcagac
ctccccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctaccc
gagaagctgaccgtctacacaacactagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatcagacaacttaaagagaccttgaaggccaacctc
tacaccgaagctctttacctggtgcgcttcctctgtgacctggtaaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagcgtcactcaggaggaggat
gttccgcaggtgcgttcggactggtttgtctatgctgtactctccagtctcccctgggtt
gggaaggagcttgatgagaagaaggacgtggagatggaccggctcctcaaccagattgac
ggttatctcaagaggcgactgaagactcatgtccccatgcttcagatttggacggcagag
aagccacacccacaagaggagtacctggactgcctgtacgctcagatccagaagctaaag
aaggaccgctggcaggagcgacacatcctgcggccgtacattgcctttgacagcgtgctg
tgcgaggccctgcagcacaacctgccacctttcaccccaccagcccacatgcccgactgc
cagtaccccatgccccgcgttatctttcgcatgttcgactacaccgatgcccccgagggc
cctgtcatgccaggcagccactctgtggagaggtttgttattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagagctgtgctgcgcagttgctgagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacgctgctcattgagctctgc
aagctgcagccaggctccctgccacaagttttggcccaagccacagagatgatgtacgtg
aggttggacaccatgaacactatttgcatagaccgactactcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactgggtggactgtttggccctggat
gcagtcaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtccctcccactttctcaggactcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgcggtg
gccatagcggtgggcaacgccatcaagaaccgggcctccaacgaggagatactcaccgtg
ctcaaagatgtgccgaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
ccactgaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagt
cactccttcagtgccctggccaagttccatgagatcctgaaagccctgacggactgtgac
gagggcaagctgcatatcctacgggtggtctacgaggtctggaagaaccacccacagatg
gtctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagccgtagcc
aactggctcttctcccctagcatggctcatgagtttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggaa
gaggccaaggataagctggagaggcaacagcataaaaagcagaaggacagtggagacgag
gaagacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatagagcgt
ctgcaggaaaaggtggagtcggcccagagtgagcagaagaaccttttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacgggcagtgtggac
ttcagcacgccctggtacaagaattgcattgagaggctgcagcaaatcttcctcatgcac
catgtgacaatccagcagtacatggggacactggagaacctgctattcaccgccgagctc
gaccatcacatcctagctgtgtaccagcagttctgtgccctgcagctctga
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integrated database retrieval system
