Oncorhynchus tshawytscha (Chinook salmon): 112221086
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Entry
112221086 CDS
T05605
Name
(RefSeq) cullin-4B isoform X1
KO
K10609
cullin 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112221086
09124 Replication and repair
03420 Nucleotide excision repair
112221086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112221086
03400 DNA repair and recombination proteins [BR:
otw03400
]
112221086
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112221086
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
112221086
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112221086
TCR (transcription coupled repair) factors
Cul4-CSA complex
112221086
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112221086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
PG_binding_4
Motif
Other DBs
NCBI-GeneID:
112221086
NCBI-ProteinID:
XP_024238952
LinkDB
All DBs
Position
LG21:20241308..20267157
Genome browser
AA seq
868 aa
AA seq
DB search
MINRLAIAIRICIHFFMFPIGLPSPNPPPPTQEARPAASDVNNDSSITSSKKRKINSSER
EDIDSISSSPKTTNYSSSSCTSTSQHIQKKLRFEDSVDFIGLDVKMAEESSASCSSNKMK
TVFLAGGVGHHANGLTKTAGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKE
AVEAIQNSISIKYNLEELYQAVENLCSHKISAKLYKQLQVVCEDHIKAQIDQFREDALDS
TLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSVWDMGLELFRFYIISDMKV
QSKTIDGILLLIERERSGETIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQ
RLMQEREVPDYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLN
HLLDENRIQDLCLLYQLFSRVRGGVLVLLQHWIEYIKAFGSTMVINPEKDKTMVQELLDF
KDKVDHIIHVCFMKNEKFVNAMKEAFETFINKRTNKPAELIAKHVDWKLRAGNKEATDEE
LEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFT
SKLEGMFKDMELSKDIMVQFKQCQNLPGNIELTVNILTMGYWPTYVPMEVHLLPEMVRLQ
EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLE
EIKLATGIEDGELRRTLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQ
IQMKETVEEQASTTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPAD
LKKRIESLIDRDYMERDKENPNQYNYVA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgattaatagactggctatagctattagaatttgtattcattttttcatgtttccaata
ggtttaccttcccctaatcccccaccgccaacccaagaggctagaccagcagcttcagat
gtaaataacgacagcagtatcacgtcttcgaagaagaggaaaataaacagttctgagagg
gaagacattgattcaatctcttcatctcctaaaaccacaaattattcatcttcctcctgc
acctccacttcgcaacacattcagaagaagttgaggttcgaagattcagtagatttcatt
ggactggatgtgaaaatggccgaggagtcgtctgcatcgtgttcttctaacaagatgaaa
acagtttttttggctgggggtgttgggcaccatgcaaacgggctgacgaaaacggcaggc
tccactaccttctccaacagcaaacctggcgctgcaaagaaactagtcatcaagaacttc
aaagaaaagcccaaattgccagagaactacacacacgagacctggcaaaagctaaaggag
gcggtcgaggccattcagaacagcatttcaatcaagtacaatcttgaggagctctaccag
gctgtggagaacctctgctcccataagatatcagccaagctctacaaacaactgcaggtt
gtgtgtgaagaccacatcaaggcacaaatcgatcaattcagagaggatgcactggacagt
acactcttcctgaagaaaatagacaagtgttggcaagatcactgcagacaaatgatcatg
attagaagtatatttttgttcttggaccgcacctatgttttacaaaattcaatgctcccg
tcagtctgggacatgggcctggagttgtttaggttttacattatcagcgacatgaaggtc
cagagcaagaccatcgacggaatcctgctgctcatcgagagggagcgcagcggcgagacc
atcgaccgtagcttgctgcggagcctattgagcatgctttctgacctgcagatttatcag
gactcctttgagcagcgctttttggaggagactaatcgtctgtatgccgctgagggacag
aggctgatgcaggagagagaggtcccagattatctccatcacgtcaacaaacgcttagag
gaggaagcagacagagtcatcacatatctagaccagagcacacaaaaacctctcattgcc
actgtggaaaagcaactactgggtgaacatctcactgcaacactgcagaaaggcttgaat
cacctgctagatgagaacagaatccaggacttgtgtcttctctatcagctcttcagtcgg
gtgagagggggcgtgctagtcctcctacaacactggatcgagtacatcaaggcctttgga
agtacgatggtcattaaccctgagaaggacaagaccatggtacaggagctgctggacttc
aaggacaaggtggaccacatcatccacgtctgtttcatgaagaatgagaagtttgtcaat
gccatgaaggaagccttcgagacgttcatcaacaagaggacaaacaaacctgctgagctc
attgcaaaacacgtggattggaaactgagggcggggaacaaggaggccacggacgaggag
ctggagaagatgttggacaagatcatgatcatcttccgattcatttatggaaaagatgtt
tttgaggccttctacaagaaagatctggccaagaggttgctggtgggaaagagtgcctcc
gtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgtggagcggcgttcacc
agcaagctggaaggcatgttcaaggacatggagctttccaaggacatcatggtgcagttc
aaacagtgtcaaaacctccctggtaacattgagctgacggtgaacatcctcaccatggga
tactggcccacctacgtcccaatggaggtccatctgctcccagagatggtgcggctgcag
gagattttcaagacgttttacctcggcaagcacagtggcagaaagctacagtggcagtcg
acattaggccattgtgttttaaaagctgaatttaaagagggcaaaaaggagcttcaggta
tccctgtttcagacactagtgctgctcatgttcaatgaaggagaggaattcaccttagag
gagatcaagctagctacaggaatagaggatggcgagctgcggcggaccctgcagtcgttg
gcgtgtggcaaggcgcgtgtcatccataaagtccccaaaagcaaagacgtggaggacgga
gacaagttctcgtgtaacgatgacttcaaacacaaactcttcaggatcaagatcaaccag
atccagatgaaagaaacggtggaggagcaagccagcaccacggaacgagtctaccaggac
cggcagtatcagatcgatgccgccatcgtcaggatcatgaagatgaggaagactctgagc
cataacctcttggtgtcggaagtgtacaaccaactcaagttccctgtcaagcctgctgac
ctaaagaagagaatagagtctctcattgacagagattacatggagcgcgacaaggagaac
cccaaccaatacaactatgtggcttaa
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