Oncorhynchus tshawytscha (Chinook salmon): 112221110
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Entry
112221110 CDS
T05605
Name
(RefSeq) rab11 family-interacting protein 1-like
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112221110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112221110
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112221110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
End3
Motif
Other DBs
NCBI-GeneID:
112221110
NCBI-ProteinID:
XP_024238993
LinkDB
All DBs
Position
LG21:complement(23576614..23593485)
Genome browser
AA seq
1550 aa
AA seq
DB search
MMSFIDLNDDQRWVPTHVNVTVLRARGLRTKGKHGGSRYVYTIIQVGKEKYTTGLVEKAT
VPEWNEECCFELLPGILEDGVRSAFPSGSGDLVLTIMHRVLIGLDVFLGQAILPLDKIFQ
DGMCPRDEWLKLNSKAGRKEKERGEIQVTVQFTRNNLTASMFDLTMKDKPRSAFGKLKDR
VTGRKIGDMESSSAIVPGRFAALSGSLGKPFREGERGEGGEDPVEIAEEKQSKVKDFFKG
KGKLRSSSDTRSCLSLASESSMLSLTSERPCPPPLDLGILVDPSSPPSSPIYSNKVKVDT
HHRDTDLAKKVLNNTQSSPKILTHNRSLSDEASRITTTAVPQPCPAVESLKGQGITPSQS
PLCINGSHIYGSEPVGPKGSGTLPSKLVLLEKCSPLSCSLQNLTKQSEDNGSAGEGRRWS
FDKVNKEDEYVEKEAEPHVSQVQSAQVGGRPVLAAASMLSSTTTVDSADKRKKLRKSLFS
GGKSDSLPAKLAPSQGCPLTEGRLRSWFGSSDSQNKPRLEVSSKVESDSDTPPPLPPRSP
IPTQCSSSTGRASPDSGHPTNTFTPSLTPNPISPANPFLPCLQCNPFFEDLITEEARRSP
PCATCSPCHSTALPCIPSTAHDVAVPKKMATIRRERPRPVARQTSLPALLPRAVTASPPN
PFTSRSISESLGRECDESFDAFASSRLNSPKSSPTNHPSNTTSWQAQVRSTPPHKGNTIP
PIEEMRMSEEEAEPPPLPPRRPITRPLVNKRSSDSWLHRGQELAVQKEACLLSQTGAASL
QHTREGGHKRCTPSPHLYPSLGKDLLVSSDMSDFHTEHSQHYANISPESPSPFKSEDDFK
KFDYEPLRDEDDSCKCMFTEQDLWPDATENNLDPNVKDSIILLASEDTTDTSPTVREDAI
VKTTSHSEIKALSLPVMLLDSEITVADLLYMSSPKHSKSSLKTLDIASITQDPTMELFSI
HPDKPTKFRNIHHESPPLTLEDLNKNLSNSDFSFIDSASDASPSPSEMITVHTLKSLSGI
FPQPPQVTHIASSAHDIRLSAEDMLTFQKPSTIDVNSALKANLPEASLCQDNWQDGGCEL
NTSGRDPASKKNNSIFTPNSLNINIESEDITRDTVDIKHTQSPLNRKGNIYKSKIDSSIV
DPSCHIRTSPVSPQIGMQQEVVRNKQEVSQPLVKRTKPVNESSPRGASSHRSLKGMIREL
YGNGGANSPGKGLRESPLHQSLSPGHVLTESIEVPFSYQPTKSNFSSPLSPDRETTFKAA
KLFVSLQKTNTNSSTQSITKENCLTERSPSKQNGTISFEDLHAKVAPNVRSPMSARLRPG
VSLHASSPSSVAPSLVTETNAQAKLLPTPGPSSIHHPPILRPSTGANATLAIAPCTSSSS
SSSTSSTTVQPLVNARHTLLPEETQPTSSLPRQESRPHPVKPLTTTASQGEKKEGRSFLE
KLKSSIHSGLAAKQTLAEAETEIEESLTDRSAQYEQLTKMELISLLLQQQMDMENQKAAS
EQQAVPLKKHEAEMKKIKAQVRDLEDYIDRLLVQIMEQTPTLLQVRSRHK
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcctttatagacttaaatgatgaccagagatgggtgcctacacatgtgaatgta
actgtccttcgtgcaaggggtttgcggactaagggcaagcacgggggtagccgttatgtt
tacacaatcattcaggtggggaaggagaaatacaccactggtttggtcgagaaggcgact
gtgccagagtggaatgaggaatgctgtttcgaacttctacccggaatactggaggatgga
gttcgcagtgcttttccctcagggagcggtgacttggtcctcaccattatgcaccgtgtg
cttatcggacttgacgtgtttcttggtcaagcaatcctacctttggataaaatatttcaa
gatggaatgtgcccgagagatgaatggctcaaactcaactccaaggccggccggaaggag
aaggagcgcggcgagatccaggtgacggtccagttcacccgcaacaacctgacagccagc
atgttcgacctaaccatgaaggacaagccacggtctgccttcggcaaacttaaggaccgt
gtgacggggaggaagatcggcgacatggagtcctcatcagccatcgtgccgggacgcttc
gccgccctgtcaggttccctaggaaaaccattccgagagggggaacgaggggaaggggga
gaggaccccgtggagatagccgaggagaagcagagcaaggtgaaggatttcttcaagggg
aagggaaagctgaggagttcgtccgacacaaggtcgtgcttgtcgctggcctcagagagc
agcatgttgtccttgaccagtgagaggccctgtccccctcctctggacctaggcatcctg
gtggacccttccagtccccccagctcccccatctacagcaacaaggtcaaagttgacacc
caccacagagacacagacctagctaaaaaagtgctcaacaacacacaatcttccccaaag
atactgactcacaatcgatccctcagcgacgaggcaagtaggatcaccactactgccgtt
ccccagccctgtcctgcagtggaatccctcaaaggtcagggtataactccctcccaatcc
cctctgtgcatcaacggaagccacatctatggatccgaaccagtgggtcccaagggttca
ggcaccctcccatccaagctggtcctccttgagaagtgctcccccctctcttgttcgctg
cagaacctcacaaagcagagcgaggacaatggttcagccggtgagggacggcgctggtcc
ttcgacaaggtgaataaggaagatgagtacgtggagaaggaggccgaacctcatgtctcc
caggttcaaagcgcacaggtagggggtcgtcctgtgctggcagctgcctcaatgctgtct
tccaccaccacggtggactcagcagacaaaaggaaaaagctcagaaagtcgttattctcc
ggagggaagagtgattctctacctgccaagttggcgccgagccagggttgtcctctcacc
gaggggagactgcgaagctggtttggctccagtgactcccagaacaagccaaggctggaa
gtttcttctaaggtagaaagcgactcagacacccctcctcccctcccccctcgctccccc
attcccacccagtgctcttcttccactggccgtgcctcacccgacagtggccatcccact
aacaccttcaccccctctctgacacccaaccccatctctcccgccaaccccttcctcccg
tgtctgcagtgtaaccccttttttgaggacctcataaccgaagaggcccggaggtccccc
ccttgcgccacctgctccccctgtcattccacagctttgccttgcatccccagtaccgcc
cacgatgtcgcagtgccaaagaaaatggccaccatacggcgcgagcggcccaggcctgta
gccaggcagacatccctccctgccttactcccgagagcggtgactgccagccccccgaat
ccgttcacctctcgctccatatcagagagcttgggaagagaatgcgacgagtcctttgac
gcctttgcgtccagcaggctgaattcgccaaagagctctcctaccaatcacccttcgaat
acaacctcgtggcaagctcaagtaagaagcactcctccacataagggtaacactattcca
cccattgaggagatgcggatgagtgaagaagaagcagagcctccaccgttgcctccacgg
aggcccataacaagacctttggtaaacaagagatcttctgacagctggttgcacaggggt
caggagctggctgtgcagaaagaggcctgtctcctgtcacaaacgggcgcagcttccctg
cagcacacaagagaaggcgggcacaagagatgcacaccaagtccccacctgtacccaagc
ttaggcaaagaccttctcgtcagcagtgacatgtcggactttcataccgaacactcacag
cattatgccaatatttctccagagtctccatctccattcaagtctgaagatgacttcaag
aagtttgactatgaaccattgcgagatgaagatgatagctgtaaatgtatgtttactgag
caggacttatggccagatgcaacagaaaacaatctagacccgaatgtaaaggattcgata
atattgttagcctcagaggataccacggacaccagtcccactgttagagaagacgccatt
gtaaagaccacttcacattctgaaatcaaagccttatctctaccagtaatgcttcttgat
agtgaaattactgttgccgacctactgtatatgtcttccccaaaacactctaaatccagt
cttaagacgcttgacattgcgtcaattacacaagacccaacaatggaattattctcaatt
cacccagataagcctaccaagttcagaaacatccatcatgaatcgcctccactaaccttg
gaagatctaaataaaaatctaagtaactctgattttagttttattgactctgcttctgat
gcttccccatctccatctgaaatgattacagtgcataccctcaaaagtttaagtggcatt
tttcctcaacctccacaagttactcacatagcatcttctgctcatgatatacggctatct
gcagaggatatgctaacttttcagaagcctagtactatagacgtcaactctgccctaaaa
gcaaatttaccagaagcctcgctttgtcaagacaattggcaagatggaggttgtgaattg
aacacatcaggcagagatcctgcaagcaaaaagaacaacagcatttttacgcctaacagt
cttaacattaacattgagtctgaagacatcactagagacactgtagatataaaacacaca
caatctccactgaatagaaaaggcaacatttataaatcaaagatagacagttcaatagta
gacccttcatgtcacattagaacttctccagtttctccacagattggaatgcaacaggaa
gttgtacgcaataaacaggaagtgagtcagcctctggtcaaacgaaccaagcctgtcaat
gagtcttcaccaaggggtgctagttcacacagaagtctcaagggaatgatacgagagctc
tacggcaacggtggtgcaaatagccctggcaaaggattgcgtgagagccctcttcaccaa
tcactgtctcctgggcatgtactcacagagagcattgaagtacccttctcatatcaaccc
accaaatcaaatttttcctcacctttgtcaccagatagagagacaacgttcaaggcagct
aaattatttgtttccttgcaaaaaacaaacacaaatagttccactcagtcaattacaaaa
gaaaactgcttaacggaacgttccccatccaaacaaaacgggaccatcagcttcgaagac
ctccatgccaaagtagccccaaacgtcagaagccccatgagtgccaggttaaggcctggt
gtctctctgcatgcttccagtccctcctctgtggccccctccctggtgactgaaactaat
gcccaggctaagctactccccacccccgggccctcctccatacatcaccccccaatcttg
agacccagcaccggagccaatgccaccttggctattgccccctgcacctcttcctcctcc
tcctcttctacctcctccaccactgtccagcccctggtcaatgcacggcacacactttta
cctgaggagacccagccaactagcagcctgccccgacaagagagcagaccccacccagtg
aagcccttgaccaccacagccagtcagggggagaagaaagagggccggtcatttctagag
aagctcaagtcttccatccactcaggcctcgctgccaagcagacactggctgaggctgag
actgagattgaggaatcattaacggacaggtctgcccagtacgagcagctgaccaaaatg
gagctgatctcccttctgctgcagcagcagatggatatggagaaccagaaggcggcctca
gaacagcaggcggtgccgcttaagaaacacgaggcggagatgaagaagatcaaggcgcag
gtgcgcgacctggaggactacatcgacaggctgctggtgcagatcatggagcagacaccc
acactccttcaagtgcgctcccgacacaagtga
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integrated database retrieval system
