Oncorhynchus tshawytscha (Chinook salmon): 112221132
Help
Entry
112221132 CDS
T05605
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
112221132
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112221132
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112221132
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112221132
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112221132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
SGBP_BT4661-like
PDGLE
Syndecan
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
112221132
NCBI-ProteinID:
XP_042159179
LinkDB
All DBs
Position
LG21:complement(26272757..26668096)
Genome browser
AA seq
1215 aa
AA seq
DB search
MRFQSSGVMVLRWDATLVLAAMLLVCCAADPTDILYRMLEEQPPNTLIGSLASDEGLPDS
GHLYKLEVGTPYLRVDGKTGDIYTTEVPIDRETLRDCRNLFEGEKCFLEFEVSITDLKQG
QGPRLIEGRIEVQDVNDNTPQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYS
LSAGPDADQLFSLQVAEDTDEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALL
RVTVTDQNDNAPKFERSHYEAELAENSPVGHSVLQVKANDADMGTNGEIDYSLHQASDAV
QRLLRIDRSTGIIYVKGLVDREEESFLKFFVVAKDRGPNSKSSKVLVTINVKDQNDNAPA
IEIRGIGLVTHHDGVANISEDMPIGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPAS
ESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVF
SPNLFEVDFAEENQPGDKVLDVVATDADSGSNAELTYSIIMDSTTKGLFEIDPKTGEVHV
RNTLDREHREQYEFHVAAADKGSPSLRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMP
PLSPVGMVTVIDADKGENAMVRLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLR
AVDAGDPPRSSYVGVTINVLDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDT
GPNAELVFSITGGNPYGLFHISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPPRHTTA
LVHIFVNETMGNITLIESLVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILV
IVVVVVIRHRMQKDTKSGYQAGKKESKDLYAPKTGPKNGKGKKSKKGKVPKPTKPLEEDE
EASLQKGLNFNLINDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASK
KHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQD
LQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLR
PLPDVAMTGNCTHECTEFGHSDACWMPGQPSPNRKSSTKNAPKLSTFVPYLESEGQDHLM
ANGSPKPMADERGSAGGGSGGSKVANIRFLPPYSSAFSGGSDSGKGCEEIPLSQAAEYHS
ATTPTNQGSKREIYL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttccagtcaagcggagtgatggtgctgaggtgggatgccacgctggtgttggcc
gccatgcttctggtttgctgtgccgctgatcccactgacattctctaccggatgctcgag
gagcagccgcccaacacgttgatcggcagcctggcatcggacgagggcctgcccgactca
ggccacctgtacaagctggaggtgggcaccccttacctgcgcgtggatggcaagacggga
gacatttacaccacagaggtccccatcgaccgtgagacactgcgggactgccgcaacctg
ttcgagggcgaaaagtgcttcctggagttcgaggtgtccatcacggacctgaagcagggc
cagggaccgcggctgatcgagggccgcatcgaggtgcaagacgtcaatgacaacacaccc
cagttcacctcgcccatcctcatgctgtccatcccagagaacacacacatcggggcgctc
ttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtactcg
ctcagcgccgggcctgatgccgaccagctcttcagcctgcaggtggccgaggacacagac
gagaagcagccgcagctcatcgtcatgggcaacctggaccgcgagcagaaagactcgtac
gatctcaacatccgtgtggtggacgggggcacaccaccgcgagccagcagcgccctgctg
agggtgaccgtcaccgaccagaacgacaacgcacccaagtttgagaggagccactatgag
gctgagctggctgagaacagccctgtgggacactcagtcttgcaggtgaaagccaacgac
gctgacatgggtaccaacggggagatcgactatagcctgcaccaggcctccgatgccgtc
cagaggttgctacgcattgaccgctccacagggatcatctacgtcaaggggctggtggac
cgagaggaggagagcttcctcaagttcttcgtggtggccaaggatcgcggccccaactcg
aagagctccaaagtcctggtgaccatcaacgtcaaggaccagaacgataatgcacccgcc
atcgagatccgtggcatcggcctggtcacccaccacgacggtgtggccaacatctcagag
gacatgcccatcggcacggctgtagccctggtgcaggtgtcggatcgtgatgaaggggag
aatgctgtggtcacctgtgtggtggccggggacgtccccttccagctgcggcccgccagc
gagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgctagactac
gagcgcatcaaggactacaggattgaaatagtagcggtggactccggtaaccctgcactg
tccagcacaaactccctgaaggtgcaagtcaccgacatgaatgacaatgcccctgtcttc
tcccccaatctgtttgaggtggactttgcagaggagaatcagccaggtgataaggtcctg
gatgtggtggccacagacgcggacagtgggtccaacgcagagctgacctacagcatcatc
atggactcgaccactaaggggctctttgagatcgaccccaaaacgggagaggtgcacgtg
aggaatacgctggaccgtgagcacagggagcagtacgagttccacgtggcggcagccgat
aagggctcgcctagcctgagggggacggccacggtggtggtcaaggtgctggaccgtaac
gacaacgaccccaagttcatgttgagcggctacagcttctccgtcttggagaacatgcct
ccgctcagccctgttggcatggtgacggtcatcgacgcagataagggcgagaacgccatg
gtgcgactctcggtggagcctgacaatggcaagtttgtcatccagaatggcacaggtact
atcctctccagcatatcctttgaccgtgagaaggagagcacatacactttccgcctcagg
gctgtggacgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtcttg
gacgagaacgataactccccctacgtcaccaagccctctaactcctcctacaagtacctc
ccacctctcacaacccccgagacacgcgttgaagtggtggaggccgaagacatcgacacg
ggacccaatgccgagctggtcttcagcattactggcgggaacccctacggactgtttcac
atctcgcccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaacggt
ctccaccgtctggtggtgaaggtgagcgacaaaggcaagccaccacgccacaccaccgcc
ctggtccacatcttcgtcaatgagaccatgggcaacatcaccctgatcgagtctctggtg
ggtcacagcctctacactcctctggacagagacattgccggggaccccaactatgcgctg
gcccagcgcagcaacatcctgtatggaagcctagcgggcatcgccggagtcatcctggtc
atcgtggtggtggtggtgatccgtcatcgcatgcagaaggacaccaagagcggctaccag
gcgggaaagaaggagagcaaggacctgtatgcccccaaaacagggcccaagaatggcaag
ggcaaaaagagcaagaagggcaaggtgcccaagcccaccaagccactggaggaggacgaa
gaggccagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgacagt
ccccggatccacctgcccctcaactaccccccgggcagccccgacttgggcagacactac
cgctccaactccccactgccctccatccagctgcagccccagtccccctctgcctccaag
aagcaccaagccgttcaggacctgcccgccaccaacacctttgtgggcacaggtgacaac
aactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccgaaatac
agcaacaaacagctcccccatcgccgagtgaccttctccacggccaatcaggctcaagac
ctgcaggacccctcccagcacagctactacgacagcggattggaggaatcggagaccccc
agctccaaatcgtcatcggggccccgcattgggcctctggccctgcctgaggaccactac
gagaggaccaccccggacggcagtatcggagagatggagcacccggagaacgatctcagg
cctctgcctgatgtggccatgactgggaactgcacccatgagtgtaccgagttcggccac
tccgacgcctgctggatgcctggccagccctcccccaatcgtaagagctccaccaagaac
gcccccaagctctccaccttcgtgccttacctggagagtgaggggcaggaccacctcatg
gccaacggcagtcccaagcccatggcagacgagcgtgggagtgctggaggtggcagcgga
ggctccaaggtggctaacatccgcttcctgcccccttacagcagtgccttctccgggggc
agcgactccggcaaaggctgcgaggagatccccctgagccaggcagccgagtaccattcc
gccaccacacccaccaaccagggctccaagagagagatttacctgtga
DBGET
integrated database retrieval system
