Oncorhynchus tshawytscha (Chinook salmon): 112221158
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Entry
112221158 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112221158
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112221158
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_16
HrpB1_HrpK
UTP6_C
Motif
Other DBs
NCBI-GeneID:
112221158
NCBI-ProteinID:
XP_042159211
UniProt:
A0A8C8HCN3
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All DBs
Position
LG21:complement(27861826..27877454)
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AA seq
727 aa
AA seq
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MAAEGSDSEDLNTNGLMEAPSALEAMEAVQLPTEKEEASEENGGGGASEAPEAAAATSYN
MPLAENEEEEDGEFPADFDRLWKLAHDNPQDFSSWTDLLQYCEQESHMTASRRALVAFLA
RYPLCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPE
SSQRIRSAFEEAVTAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRVLRVPTQLYSSH
YEKFKTHLNAHAPKDVLSAVEYEGLLEESKQSHKTEKSELAEGEEELPPGEEKEPTEEEL
IPKMRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLRAWHSYLDWELT
ELGGEKEVKTESEPEAMEGQEEEQKEEKEGSKSSEIVAGGDRRVRILFERCLIACALYEE
FWTKYVQYLEPQSLDEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLEALE
TSVPGLAMVRLRRAGLERRAGRLDESEALLRDAVAQAKETPHLHAFYSIKLARLLQKLCK
NPSKARGVLQEALEISPDDGKLHLNLLELEVSGDPRGSAEGVQQCVTRALAAPLSPQTKI
LFSQRGLQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRVAENGDSEDPEKMSKGEDVSA
VPAPPQAPPTMPHVPITTPPPPMMGGDMSAVHAGYGGYGSWHQQPQYGGYGGYQQAWNYN
QGYYPPS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctcggattcagaagacctgaacaccaacgggctaatggaggctcct
tcagctctggaagccatggaggctgtccaacttccaacagagaaggaagaggcatcagag
gagaatggtggaggaggagcctctgaggctccagaagcagcagctgcgacatcatacaac
atgcctctggcagagaatgaggaggaagaagacggagagttccctgcggactttgaccga
ctctggaagctggcccatgacaatccacaggacttctctagctggactgacctactgcag
tactgtgagcaagagagtcacatgacagcgtcacgtcgggcgctggtagcctttctggca
cggtacccactgtgctacggatactggaagaagtttgccgacctggagcgacgtgctggc
tacaccaacaaagctcaggaggtgtgtgttcagggtctgaaggccattcccctgagtgta
gatctgtggatccactacattaacctgctactgggcacgctcaacatgaacctgccagag
tcctctcagcgcattcgcagtgcatttgaggaggcggtgacggcagcaggactggacttc
cactctgaccgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaag
gctgccactggagtctacgacagagtcctcagagtccccactcagctgtacagcagccac
tatgagaaattcaagactcatcttaatgcccatgcgcccaaggacgtcctctcagcagtg
gagtatgaggggttgcttgaggaatctaaacagagccacaagactgagaagtctgagttg
gctgagggggaagaggagttaccacctggggaagagaaggaacctacagaggaagaactg
attccgaaaatgcgagagctcctattggctcgcagagagaaggtgtaccaagacctggag
ggagaggtcaggaagaggtggaactttgaggaagctatcaagcgtccatatttccacgtg
aagcctctggaccggacccagctgagggcctggcactcctacctggactgggagctcacc
gagctggggggtgaaaaggaggtgaagaccgagtccgaaccagaggccatggagggccag
gaagaggagcaaaaggaggaaaaggaggggtcaaagagcagtgagatcgttgccggggga
gaccggagggtacggatcctgtttgagcgctgtctgattgcctgcgctctctacgaggag
ttctggaccaagtatgttcagtacctggaacctcagagtctggacgaggcgcggggagtg
tttcggcgagcctgtgagatccacctggcccacaaacacaccatgcacctgcagtgggcc
accttcgaggagaggcatggtgacctaacagaggcacggcgagtgttggaggctctggaa
acctcagtgccgggattggccatggtccggctgcgcagggcggggctagagagacgggcg
ggccggctagatgaatcagaagctctgctcagggacgcggtggcccaggccaaagagaca
cctcacctccatgcgttctactccatcaaactggcccggctgctgcagaagctctgcaag
aaccccagcaaggcccggggagtcctgcaggaggcgctggagattagcccggatgacggt
aagctgcacctgaacctgctggagctggaggtgtccggtgaccccagagggtcggccgag
ggggtgcagcagtgtgtgacgcgggcgctggccgcacccctctccccacagaccaagatc
ctcttctcccagaggggcctgcagtacgctgaggactatgggacctctgtgcaaagtgtg
ctaacagtctatgaggagcatcagaagctactgaaagagctcggcaacaagaagagagtg
gctgagaacggagacagtgaggacccagagaagatgagtaaaggagaagatgtatctgct
gtgcccgctccaccacaggcccctcccacaatgccccatgtccccataacgacaccacct
ccacccatgatgggtggggacatgagtgcggttcatgcaggctatggaggatatggaagc
tggcatcagcaaccacagtatgggggatacggaggctaccagcaagcctggaactataat
cagggttactaccctcctagctaa
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