Oncorhynchus tshawytscha (Chinook salmon): 112221170
Help
Entry
112221170 CDS
T05605
Symbol
atg2a
Name
(RefSeq) autophagy-related protein 2 homolog A
KO
K17906
autophagy-related protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112221170 (atg2a)
04136 Autophagy - other
112221170 (atg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112221170 (atg2a)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112221170 (atg2a)
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
112221170 (atg2a)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112221170 (atg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2_CAD
VPS13_N
PPP4R2
Motif
Other DBs
NCBI-GeneID:
112221170
NCBI-ProteinID:
XP_024239083
LinkDB
All DBs
Position
LG21:27667436..27694234
Genome browser
AA seq
2030 aa
AA seq
DB search
MSRWLFPWSGSIKKRACRYLLQHYLGHFLQERLSLEQLSLDLYNGSGVIKEINIDVWAVN
EHLESLGAPFEIVDGFVSSIEVTIPWSALVTDHCTLIISGLQITCRPKYRSSGGLDSQGW
STCMTSSMQLAQECLKDPPEASEEPPAPLEGLEMFAQTIETVLRRIKVTLLDTIVRIEHQ
PLDMETGIALEVHIKRLEYCDEAVRDPSQTVPVDIHQPPAFLHKILQLSSVQLLYETTGG
PQGPFRADTTGSASASEEEEEGVEEEEEGVEEEEEGVEEEEEGVEEEEEEEGVEEEDDPP
AVQQPLLIGSCSGFMETTVKIKQNDMLPGPKLELDGKVGCLHLLLSPDQITHLTDLLSAL
CIDTEPKPSGAGVHSRPLDSEDLRLIEEDLSKQLSSSPGDRDPDWDEEPDMEPYLTGLEN
GDMFFSMGPGMTSSVTSTRSLSDSMASSTHSQASYAQGLPQGPRHYPVPGSLSSLPQCSR
IPGRSSQSEPLKPEVLLRLSLGGLTLTLLEQDPPPGPDAAYSLAQVSQVFFRELAFFKDS
MFSERDFHHLRASFAKACPHSHLRMTGAAVQVACEMRSAGRHSRAVTSDLSFSRLELLEC
LWEPGKPQYTELLHFQRAGMFTVGATARPCAQLHYSLTEKHLRKGRQRVLRRDSVVRVEL
GELSAELDLDILSRLESLSRACSHCPTQTGGGPVHTQTQSSELHSSLSLLSPHAILKLRF
PIPDLRPYHLRRPPSQRSVRQENLVLELCDLDIRSQEGPDLQPDPHAPPGPSHGSLTQLL
EASFSDMHGTYEGWEGGSFPCIRVKKSQESMAKLSVRVSGGEGLGSGLGGVGVGLMRDLG
SMSFENPCELREKTSSPFSSNRTMFETEEMVIPADPEEMQQFQSQCVSQCVVDVSLPLAY
IFLPSKQAFQSVYNRINNDLLMWEASPPSDPKSDHSPQHRRQDNDYFHLCKSAFKLDSEE
EEEEEDAQFYTASVSARCGQSEPRPNHNLSLLSLTVVIGKGRLQAMTDSKGETGSQEDRC
HGELMLDLEGGKMFSVAQHQNNPHLSFLCLESRRVELYHKAVVKDSPVPRRLEMPSFTPP
GHLDPTIYPTEVGVSSVSGRETEVHMLSTAFKITLDPQRNVKEFLVALRLHGATMRHQMA
QTNHSWHEQLVDFLDVIDDPILGYTSPAVITVLHTHLATCAVDYRPLYLPLRVLFTAESF
SLSSNIIVDTATFHLRFILDDSALYLSDKCESGVVDLRRDYVCVLDIDLLELAITTWKGS
DKGKLSQPLFELRCSNNVVHLHTCADSCAALVNMLQYLVSQGDLHPPPRQTSPTEIAGQK
LPLSESPASLPPCPPAETAEINQCDLLDALIDTERSHPDEDMDSGSPTVPRGSPVSVYLF
PGEAPKLPPPVVIDGEESELDGLVATATEVQADMMSEEGSECSEDNEDFCILEAPGMGIP
PRDGEPMVTVLTEGPIRVREGHFSRPRGSSDLLRAPSHFPVPQSRVVLREVSVVWHLYGG
RDFGGKAMSTHTQHGNRGRSAPSGMRGSPSRSAAPSRPQNSWRWAGGGGRQHNLLMEIQL
TKVSFQHESYPVVVSAAGPCQEGRMPGVGVGAVGEQPLSRQVFIVQELEIRDRLASSQLN
KFLYLYTSESMPRRAHSNMLTVKALQVCPDSGVGGPECCLRISLLPLRLNIDQDALFFLK
DFFSSLAAGVNPYLPMDPAAEVKTDPSQKPTEDGVIGTETTSGLGPDLTASVETTYSEQS
SSSSGSTSSTDQPIYFREFRFTSEVPIWLDYQGKHVVIEQGTFAGILIGLAQLNCSELKL
KRLCCRHGLLGVDKVIQYAVTEWLTDIRKNQLPGILGGVGPMHSVVQLFHGVRDLFWMPI
EQYRRDGRIIRGLQRGAASFGTSTASAALELSNRLVQAIQATAETVYDILSPTPPLNRYI
TEGRPPSNQPRRPHQPADLREGVAKAYDTVREGMMDTAQTLCDVASRGHEQKGLPGAVGG
VLRQIPPTVVRPLIVASEATSNLLGGMRNQIKPDARKEDFLKWRSDEGQE
NT seq
6093 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgctggcttttcccctggtcaggctcaatcaagaagcgggcctgtcggtacctc
ttacagcattacctcggtcacttcttgcaagaacgactgagtttggaacagttaagtttg
gacctgtacaatggtagtggtgtcatcaaagaaatcaacatcgacgtttgggcggtcaac
gaacacttggagtctcttggggctccatttgagattgtggatgggtttgtgagcagcata
gaggtgacaattccctggtcagctcttgtcaccgaccactgcaccctcatcatctcaggc
cttcagataacatgcagacccaagtacaggagcagtggggggttggactcccagggctgg
tccacatgcatgacctccagcatgcagctggcccaggagtgtctaaaggacccccctgag
gcgtcagaggagccgcccgctccactggagggcctggagatgtttgcacaaactattgag
acagtcctgcgtcggatcaaagtcaccctcctggacaccatcgtccgaatcgagcaccag
cccctggacatggagacgggcattgccttagaggtgcacatcaaacggctggagtactgt
gacgaggcggtgagggaccccagccagacggtgcctgtagacatccaccagccgcctgcc
ttcctgcacaagatcctccagctcagctctgttcaactgctgtacgagaccaccggaggg
ccccagggtcctttcagagcggacaccactggctcagcctcagccagcgaggaggaggag
gaaggtgttgaggaggaggaggaaggtgttgaggaggaggaggaaggtgttgaggaggag
gaggaaggtgttgaggaggaggaggaggaggaaggtgttgaggaggaagatgaccctcca
gccgtccagcagcccctcctcatcggcagctgctctggcttcatggagaccacggtcaag
atcaaacagaacgacatgctgcctggacctaagttggagctggatgggaaggtgggttgc
ctccacctgctgctctccccagaccagatcactcacctgaccgaccttctgtctgctctc
tgcatcgacacagagcctaagcccagtggtgctggggttcacagccgtcccctggactct
gaggacctgcgtctgatagaggaggacttgagcaaacagttgagctccagccctggagac
agagatccggactgggacgaagagcctgacatggagccctacctcactggtctggagaac
ggggatatgttcttctccatgggtcctggtatgactagtagtgtgacgtccacgcgctct
ctctccgacagcatggcgtcgtctacacacagccaggctagctacgcccagggcctacca
cagggtcccaggcattatcctgtaccaggatcactatccagcctgccacagtgtagcaga
ataccagggcgaagtagccaatcagagccactgaagccagaggtgttgctccgcctctcg
cttggtgggctcaccctaaccctactggagcaggacccgccccccgggccggacgcagca
tactcattggcccaggtgtctcaggtgttcttccgggagctggccttcttcaaagacagc
atgttcagcgagagagacttccaccacctcagggctagcttcgctaaagcctgcccccac
tcacacctcaggatgactggagcagcggtacaggtggcgtgtgagatgcgcagtgcaggt
cgccactctcgtgctgtgacctcagacctgtccttcagtaggctagagctgcttgagtgt
ctctgggagccaggaaagccccaatacactgagttgctccacttccagcgtgctggaatg
ttcacagtgggagctacagccagaccctgtgcacagctacactacagtctcacagagaaa
cacctgcgcaaggggagacagcgtgttctgcgtagagacagtgtagtgagggtagagttg
ggagagctgagtgctgagttggacctggacatactaagtcgactggagtctctgagcaga
gcttgcagccactgtcccacacagacaggaggaggacccgtccacacacagacccagagc
agtgagctgcactcctctctctccctcctctcgccccacgccatcctcaagctccgcttc
cccatcccggacctccggccgtaccacctccgacgcccgccttcccagaggtctgtgcgg
caagagaacctggtgctagagctgtgtgacctggatatccgctcccaggagggccctgac
ctacagccggatccccatgcaccccctggcccctcccatggctccctcacacagctactg
gaggccagcttcagtgacatgcacggaacgtatgagggctgggagggaggttccttcccc
tgtatcagagtgaagaagagtcaagagtccatggccaagctgtcagtgcgtgtcagtgga
ggagagggtctggggtcagggttagggggggtaggggtgggtctgatgagggacctggga
tccatgtcgtttgagaacccctgtgaactccgagagaagaccagctctcccttctcctcc
aaccgcaccatgttcgagactgaggagatggtgatcccagcagacccagaggagatgcaa
cagttccagtctcagtgtgtgtctcagtgtgtagtagatgtctctctgcccctggcctac
atcttcctgcccagcaaacaggccttccagagtgtctacaacaggatcaataatgacctg
ttgatgtgggaagcctctcccccttcagaccctaagagcgaccacagcccccaacaccgt
cgccaagacaatgactatttccatctttgcaagtctgccttcaaactagactcggaggag
gaggaggaggaggaagatgctcagttctacacagccagtgtatcagccagatgcgggcag
tcggagccccgccctaaccacaacctcagcttgctctccctcaccgtcgtcatagggaag
ggccgcctccaagccatgacggacagcaagggggagacaggaagtcaggaggaccggtgt
cacggggagctcatgttggacctggaagggggaaagatgttcagtgtggcgcagcatcag
aacaacccccatctcagcttcctgtgcttggagagcaggagggtggagctttaccacaaa
gctgtagtgaaagactcccccgtccccaggcggttagaaatgcccagcttcactccccca
gggcatctggaccctaccatttaccccacagaggtgggggtgagcagtgtgagtggcagg
gagactgaggtccacatgttatccacggctttcaaaataaccctggaccctcagaggaac
gtcaaggagttcctggttgcccttcgtctccatggcgccactatgcgacatcagatggca
cagaccaatcacagctggcacgaacagctggttgattttctggatgtcattgatgacccg
atcctgggctacacatctcctgcagttattaccgtcctacacacacacctggccacctgt
gcggtggactacaggcccttgtatcttccattgagggtgttgttcacagcagaatccttc
tctctgtcgagtaacatcatcgtagacacggccacctttcacctcaggtttatcctggat
gactctgcactgtatctctctgataaatgtgaaagtggtgttgtggacctgagacgagac
tatgtgtgtgttctggacattgatctgctggagctggccattaccacatggaaaggcagt
gataaagggaaactgtcccagcctctgtttgagctgcgttgctccaacaacgtggtccac
ctccacacctgtgctgactcctgtgctgccctggtcaacatgctgcagtacctggtctcc
cagggagacctgcacccgcccccccgacaaacatcacccactgagatcgcgggacagaaa
ctgccgttgtcagaaagtcccgcctccttgccaccctgccctccagctgagactgctgag
atcaaccagtgcgatctccttgatgctttgattgacaccgagaggagccatccagatgag
gatatggactcgggttctcccacagtcccgcggggctcacctgtctctgtctacctgttc
cccggggaggctcccaagctccccccacctgttgtcattgacggggaggagtcagagctt
gacggactggtggcgacagccactgaggtgcaggcagatatgatgtcagaggagggctct
gagtgttcagaggacaacgaggacttctgcatcctagaggctcctgggatgggtatacct
cccagagacggggagcccatggtgacggtgctaactgagggtcctatcagggtgagggag
ggccacttctcccgaccgcggggcagctctgacctgctgcgggcccccagccacttccct
gtcccccagagcagggtggtgctacgagaggtgtctgttgtctggcatctgtacggcggg
agagatttcggtggcaaggccatgtctacacacacgcagcatggaaacaggggtcgctct
gccccttctgggatgcgtgggtccccgtcccgctccgctgctccgtcacggccacagaat
tcttggcgttgggctggaggtggtggacgacaacacaacctgctcatggagatccagctc
accaaggtgagcttccagcacgagtcgtatccagtggtggtgtctgcggctgggccgtgt
caggagggaaggatgcctggggtaggggttggcgcggtgggcgagcagcctctgtcccgc
caggtgttcatcgttcaggagctggagatacgcgaccgcctggcctcgtcccagctcaac
aagttcctctacctgtacacaagcgagagcatgccccgcagagcacactccaacatgtta
acagtgaaggccctgcaggtgtgtccagactcaggtgtaggtggtccagagtgttgttta
agaatcagcctcctccccctccgactcaacatcgaccaggatgccttgtttttcctgaag
gatttcttcagtagtctggctgctggagttaacccctacctgcctatggatcctgcagct
gaggtgaagacagacccttctcagaagcccactgaagatggggtcattggcacagagacc
acttctggtctgggtcctgacctcactgcttctgtagaaaccacttatagtgagcagagc
tcctcgtcctctggctccacctcttccactgatcagccaatctacttccgggagttccgt
ttcacctctgaagtccccatctggcttgactaccagggcaagcatgtggtcattgagcag
ggaacgtttgcagggattcttattggtctggcccagctgaattgctctgaactgaagctg
aagagactttgctgccgacacggacttctaggtgtagataaggtgattcagtacgctgtc
actgagtggctgacagacatccgaaagaaccagctgccgggcattctgggaggtgtaggc
cccatgcactctgtagttcagctgttccatggagtcagggacttgttctggatgcccata
gagcagtacaggcgggacggccgcattatccggggtctccagcggggggcagcgtccttc
ggtacctccactgcctctgctgctctggagctcagcaacagactggtgcaggccatacag
gccacagcggagactgtgtatgacatcctgtccccaacgccccccctgaaccgttacatc
acagagggccgaccgccctccaaccagccccgccgaccccaccagcctgccgacctcaga
gagggcgtggctaaggcctatgacactgtcagagagggtatgatggacacagctcaaacg
ctatgtgacgtggcgtctcgcgggcatgagcagaaaggtctgcctggtgctgtgggcgga
gtcctgcggcagatcccgcccaccgtcgtccgtcccttaatagtggcatccgaggcaacg
tccaacctactggggggcatgcggaaccagatcaagccagatgcacggaaggaggacttc
ttaaaatggcgctccgacgaaggccaagagtga
DBGET
integrated database retrieval system
