KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112221281
Entry
112221281         CDS       T05605                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03020  RNA polymerase
otw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112221281
  09124 Replication and repair
   03420 Nucleotide excision repair
    112221281
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112221281
   03019 Messenger RNA biogenesis [BR:otw03019]
    112221281
   03400 DNA repair and recombination proteins [BR:otw03400]
    112221281
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     112221281
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112221281
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112221281
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 112221281
NCBI-ProteinID: XP_024239221
LinkDB
Position
LG21:complement(39670581..39676199)
AA seq 172 aa
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aatctcctgaacactgtgaaacagaagctcttcacagaagtggagggaacatgcacagga
aaatatggattcgtcattgcggtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggatttgtgctttaccccgtcaagtacaaggctattgtcttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggactgttcacagag
atcggccccatgtcctgtttcatctctcgtcactccattccctcagagatggagtttgac
cccaactcaaatcctccctgttataagaccactgatgaggacattgtaatccaacaggat
gatgagattcggttaaagatcgtgggaacaagagtggataaaaacgacattttcgctatt
ggatccctcatggacgattacctgggtcttgtcagctga

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