Oncorhynchus tshawytscha (Chinook salmon): 112221282
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Entry
112221282 CDS
T05605
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X2
KO
K16498
protocadherin delta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
112221282 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112221282 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112221282 (pcdh11)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112221282 (pcdh11)
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112221282 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RibLong
Fibulin_C
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
112221282
NCBI-ProteinID:
XP_024239223
UniProt:
A0A8C8FEG6
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All DBs
Position
LG21:39031144..39318699
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AA seq
1036 aa
AA seq
DB search
MDLAGHAHVLVVLLTCLVLLSWAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVTIS
DVNDNRPVFKDSEVEVNIPENAPIGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKRHF
SIDSTTGLITVKQPLDREATPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFTV
MARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSDAG
DNSVITLSILNGKDNFLIDPQTGVIKPNLTFDREQQSSYTFMVKAIDGGHPPSTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSNAT
FIQEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVTIEESKPDDPSQEHING
TLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKHHV
IQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTSGQIHTRQETALKPPLYDT
LCGSGTSRCHRIKINL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaggtcatgctcatgtgctggtggtgttactcacctgcctggtcttgctg
tcctgggcccaagagaaggactacacggtgagggaggagcagcccgagaatgtccgcatt
gggaacctacggaaggacttggacctgaaccttgaccctgacttcaagctgtcctcgcca
ctgcagtttaagcccgtctacaaaacgggcgatgtgcctttggtgagggtagaggccaac
accggggagatcttcaccacggctcaccgcatcgaccgagagaagctctgctcaggagta
ttcaacgagaagcgctgcttctacgagatcgaggtcgccgttctgcctgacgagatcttc
cgtctggttaagatccggttcctgattgaggacatcaatgacaacgctccactcttccag
tccaccgtaataaacatctccatcccagagaacacagccatcaacacccgataccccgtg
ccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaacttgtcaag
agtgtaagtgagtttggcctagacatcatcgagaccccagagggagacagatggcctcag
ctgatcgtccagcagagtctggaccgcgagcagaaggacaccttcgtcatgaagatcaag
gtggaggacggaggaacgccacccaagtccagcacggccatcctccaggtcaccatctcc
gacgtcaacgacaatcgaccggtcttcaaggacagtgaggtggaggtgaacatccctgag
aacgcccccattggaacctccgtcacccaactccacgccacagacgcagatctcggctcc
aacgcccagatccacttctccttctccaaccagatctcctcatccaccaagaggcatttt
tccatagacagcaccaccgggctgatcactgtcaagcagcccttagacagagaagccact
ccggtccacaaactcatcgtcctggccagcgacggcagctccactccctccagagctacg
gttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcggtatata
atgaaccttgtaaatggaacggttctactgtcagagaatgctcctctcaacacaaaaata
gccctaattacagtgacggacaaggactcggatctgaacggcaaagtgacttgttacact
gaccatgacgttcctttcaggttaaagccagtctttaatgaccaattcctgctggagact
gcggcccccttagattacgaaacaaccagggaatatgcaattaagatagtagcatcggat
tcagggaagcctcctttgaacacgtcagcgatggttttaataaaaattaaggacgagaat
gacaacgctcccatcttccctcaacctgagattcagctgtccataccagagaacaatgat
ccatccacgcagctcataaagatcagtgccacggatgcagacagcggacataatgcagag
attatttattctcttggccctgacgctcctgatgggtttaacatagatagacggtcagga
atcctctccgttggcaaacgcctggatagagagaagcaggagaagtattcgttcactgtc
atggcacgggacaatgggtctacttccctgcagagcaatgtcacagtgaggttaatagtg
caggacctcaacgacaacagcccagcttttacccatcctgagtataacttctacgtgcct
gagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattctgacgcaggt
gacaactccgtcataacactgtccatcctgaatgggaaagacaatttccttattgatccc
cagaccggtgtgatcaaacccaacctcacgtttgatagagagcagcagagctcatacact
tttatggtgaaggctatagacggagggcatccacccagcacttcatacgccaaggtcacc
ataaacgttgtggatgtcaatgacaatcgacccgtttttgttatcccctcgtccaactac
tcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagggtgttcgct
atagacaatgacactggcatgaatgctgagctgcagtacagcatcattgggggatcacca
agagggctgtttgccatagacaaaacaactggtaatataactctgcaggagaagatagtc
tcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggccagccagag
tccttacacgcaatcgccctcattcacctgttcattaacgagactgtatccaacgctacg
ttcattcaagagcagctacgtaagagcttggagactccattggaccgtaacgtgggagac
agtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgctattatagctggg
actatgacagttatcttagtcatcttcgtgacggccttggtgcgctgccgtcagacgccc
aggcacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaaccaggag
aaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctcctcttg
aactttgtcaccatagaagaatccaagcctgatgatcccagccaggagcacattaatgga
accctggacctgcctgtggagctagatgagcagaccatggggaaatacaactgggccact
acgccgaccaccttcaaacctgacagcccagacttagccaagcattacaagtctgcctcc
ccccagccaaccttccaaatcaaaccagagaccccgatggcgcccaataaacaccacgtg
attcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactccaagtgc
tcctccaccagctcagacccgtactcggtctcagagtgcagctgtcaggggggattcaag
acttctgggcaaatccacaccagacaggagacggcactgaaaccaccactctatgacaca
ctctgtggctcaggtacaagtcgctgccacaggataaaaatcaatctctag
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