Oncorhynchus tshawytscha (Chinook salmon): 112221367
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Entry
112221367 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: arginine-glutamic acid dipeptide repeats protein
KO
K05628
arginine-glutamic acid dipeptide repeats protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112221367
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112221367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Atrophin-1
BAH
GATA
ELM2
Myb_DNA-binding
DUF7952
CCDC47
DUF7573
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
112221367
NCBI-ProteinID:
XP_042160216
LinkDB
All DBs
Position
LG22:41214924..41492630
Genome browser
AA seq
1573 aa
AA seq
DB search
MTADKDKPDREKDRDRDRDRERDRERDRDRDKRDKASRESESSRPRRSCTLEGGAKNYAE
SEDEDNENRGGAGAVGGINMGMGEESGKKGKKKMIKKKSRYERMENGEITSFITEDDVVY
RPGDCVYMESRRPNTPYFICSIQDFKLSKRDHLLLSVKWYYRQSEVPDSVYQHLVQDRNN
ENDSGRELVITDPVVRGRELFISDYVDTYHAAALRGKCNIAHFSDIFAAREFKARIDSFF
YILGYNPETRRLNSTQGEIRVGPSHQAKLPELQPFPSETPGVLTQAVTENEELVWMPGVN
DCDLLMYLRAARSMAAFAGMCDGGSTEDGCLAASRDDTTLNALNTLHESCYDAGKALQRL
VKKPVPKLIEKCWSEDEVKRFIKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPE
AASSRAHRRHRRQPVFRRIKTRTASTPVNIPSRPPSSEFLDLSSANEDDLDSEDSEQELK
GYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEDE
DGLSGKHSMKTRRNRGSMSTLRSGRKKQTASPDGRVSPTNEDLRSSGRTSPSAASTDSTD
SKTDPMKKPSKKIKEESPMKCAKRQREKGGASDTEDTDNRTIAKKSKTQELGRSDSPSEC
EGESSDGHSVNEECSSDAKDIDQDNRSSSPSIPSPRDGESDSDSSAQQQLLLLQRRERER
DREGQSQHPPVIQSCQPGTSGGRSTTPPLPPTSSTAPSLVPQVSSPSAPPTFLPLPLPPP
MPQQAGPLSLNQSGVSIHPQRRPSPSPHSPLQGMSQAPPPGPQAPPPGPQSLPSALHGPQ
PHPSSIPHPLQVGPSHLPHPHSFPQSQVPPSPLPLGQLQQPPHRVHTPPSQSLSQGVSSN
QLPREQLIPHAPSMSMPHIKPPPTTPIPHMPNRDPQSHKHGPPHLSAPPSPXMPSNLPPP
PALKPLSSLSTHHPPPAHPPPLQLMPQGPGQQLQPPPAQPLSSPSPRISPFQREREATST
PSSTSLRTIAILPPQHTPTAPVPSSPLQPCPAPSSAGCPPSSSSLPPGLQPPSSFSMPIT
APVGSICTGPAVPPVHIKEEPLDESEEPESPPPPPRSPSPEPTIVNTPSHASQSARFYKH
LDRGYNTCARTDFYFTPLAASKLAKKREEALERVKREAEQKAREEKEREREKERERERER
EKEQERAAKASSSCHDGRMGDPQMGGSAHMRPPFDGPPTSIAAVPPYIGPDTPALRTLSE
YARPHVMSPTNRNHPFFVSLNPNDPLMAYHMPGLYNADPGMRERELREREMREREMRERE
LRERMKPGFEHKPPELEGMHPSANPMEHFARHGAISLPSMAGPHPFASFHPGLNPLERER
LALAAGPQLRPDMSYPERLAAERLHAERMAAVANDPIARLQMFNITPHHHQHSHIHSHLH
LHQQDSLHQGGGECLVCPPGSGGHPLVDPLAGGPHLARFPYPHGSIPNSLLGQNPHEHEM
LRHPVFGTPYPRDLPPQMSAAHQLQAMHAQSAELQRLAMEQQWLHGHHHMHGGPLPGQED
YYSRLKKESDKQL
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcggacaaagacaagccagacagagagaaggacagggacagagaccgagacagg
gagagggacagagagagggacagagaccgggacaagagggacaaagcgtccagggagagc
gagagctcacgaccgcgccgcagctgcacgttggagggcggagctaagaactacgccgag
agcgaggacgaggataacgagaacaggggaggggccggggcagtaggcgggatcaacatg
gggatgggggaggagtcagggaagaagggaaagaagaagatgatcaagaagaagtcgagg
tatgaacggatggagaacggagagatcacttccttcattactgaagacgatgttgtctac
agacctggcgattgtgtatatatggagagccgcaggcccaacactccctacttcatatgt
agcattcaggattttaaactgagtaagcgagaccatctgttactcagtgttaaatggtac
taccgtcagtcagaggtccctgactcagtctaccaacacctggtgcaggatcgcaacaat
gagaacgattctggccgggagctggtcatcacagacccagtggtcaggggcagagaactc
ttcatctccgactatgtggacacataccatgctgctgcccttagggggaagtgtaacatt
gcgcatttctcagacatcttcgctgccagggagttcaaagctcgcattgactcctttttc
tacatcctgggatacaacccagagaccaggcgactaaacagcacacagggggagatcaga
gtggggcccagtcaccaagccaagcttcctgagttgcagcccttcccctccgagaccccg
ggggtcctgactcaggctgtaacagagaatgaggagctagtgtggatgccaggggtcaac
gactgtgacctgctcatgtacctcagggctgcaaggagcatggcggccttcgctgggatg
tgtgacggaggttctacggaggacggttgcctagcagcctcgcgagacgacaccacactc
aacgcactcaacacgctccacgagagctgttacgatgcaggcaaggccctacagcgcctg
gtgaagaagcccgttcccaaactcatagagaagtgctggtcagaggacgaagtgaagcgg
ttcattaaagggctcagacagtacggcaagaacttctttaggattcggaaagagctgcta
cccaacaaggaaacgggtgagttgataaccttctactactactggaagaagactcctgag
gcggcgtcgtccagggcccaccgtagacaccgtcgccagcctgtgttccgacgcatcaag
acacgcaccgcctccacccccgtcaacatcccgtctagacccccctcttcagagttcttg
gacctgagttcagccaatgaagatgacctggacagtgaagacagtgagcaggagctgaag
ggttacgcctgccgacactgtttcaccaccacctctaaggactggcaccacgggggcaga
gagaacatcttgttgtgtacagactgtcgtatccactttaagaagtacggcgagctgccc
cccatcgagaagcccgtggacccacctccgtttatgttcaaacccgtcaaagaggatgag
gatggactcagcggcaagcatagcatgaagacccgacgcaacagaggatcgatgtcgacg
ctccgtagtggccgtaagaagcagacagccagccctgatggacgagtgtctccaaccaat
gaggacctccggtctagtggccgtacctccccctctgcagcctccacagacagcactgac
agcaagacagaccccatgaagaaacccagcaagaagatcaaggaggagtctcctatgaag
tgtgccaaacgccaacgagagaaaggaggagcctcagacaccgaggacacggacaacagg
acaatcgcaaaaaagtccaagacccaggagctgggtcggtccgactcgccgtcagaatgc
gagggagagagctccgatgggcacagcgtcaacgaggagtgtagcagtgacgctaaagac
atcgaccaggataaccgcagctcctcgccctccatccccagcccccgagacggggagagt
gactcggactcctccgcccagcagcagctgctcctactgcagaggagggagagagagaga
gatagggagggacagtcgcagcaccctccggttatccagtcctgtcagccagggacctcc
ggtggtcgctccaccaccccgccattacctcccacgtcctccacagccccctcactggtc
ccccaggtgtcctctccctccgcaccccccactttccttccactgccgctaccgcctccc
atgccccaacaggccggccccctctctctcaaccaatcaggggtgtccatccacccccag
aggcggccctctccctcgcctcattctccgctgcaggggatgtctcaggctccaccccca
ggacctcaggctccacccccaggaccccagtcgctacctagcgcgctccacggcccacag
ccccacccatcatccattccccacccacttcaggttggcccctcccacctgccccacccc
cactccttcccccagtctcaggtcccgccctccccactgcctctcggccaattgcagcag
ccgccccacagggtccacacgcctcccagccaatcgttgtcccagggtgtatcgtccaat
caactgccccgtgagcagctcataccccatgccccctccatgtctatgccccacatcaag
ccccctcccaccacccccatcccccacatgcccaaccgcgacccccagtctcacaaacac
ggccctccacatctatcggcgcccccttcccccnagatgccctccaacctgccccctccg
cccgccctcaaacccctctcctccctgtccacccaccaccctcccccagcccaccctcct
cccctccagctcatgcctcagggccctggccagcagctccagcccccaccagcccagccc
ctgtcctcacccagtcccagaatctccccctttcagagagagagagaggcaaccagcacc
ccctcctctacctctctccggaccatcgcaatcctcccaccccaacacaccccaacagcc
cccgttccctcctcaccccttcaaccctgtcctgccccctcctccgctggctgccctccc
tcgtcctcgtctctaccaccaggcctccagcctccctcctccttctccatgcccatcacc
gcccccgtcggctccatctgcacaggtcctgccgtcccacctgtacacatcaaggaggaa
cctcttgacgaatcagaggagcccgagagccctccgccccctcctcggagcccctccccc
gagcctacaatcgtcaacacgcccagccatgccagccaatcagcacggttctacaagcac
ctggaccgtgggtacaacacgtgtgctagaacagacttctactttactcctctggctgct
tctaaactggccaagaagagagaagaggcgctggagcgggtcaagagggaggccgagcag
aaagcccgggaggagaaggagagggagagggagaaggaacgagagagggaacgggaaaga
gagaaggaacaggagagagctgcgaaagcctccagttcgtgtcatgacggtcgtatgggt
gacccccaaatgggtggctccgcccacatgcggcctcccttcgacggcccccctacctcc
atcgccgcggtgcccccctacatcgggcccgacacgcccgcccttcgcaccctcagcgag
tacgcccgcccccacgtcatgtccccgaccaataggaaccaccccttcttcgtctccctc
aaccccaacgaccccctgatggcctatcacatgcctggcctctacaacgccgacccgggc
atgcgggagcgcgagctgcgagagcgggagatgagggagagagagatgagggagagggag
ctgagagagaggatgaagcctgggttcgaacacaaacccccggagctagaaggcatgcac
ccctcggcgaaccccatggagcacttcgcccgacacggggccatctccttaccatccatg
gcgggaccgcaccccttcgcctccttccacccaggtctcaaccccttggagagggagcgt
ttggcgttggccgcgggaccccagctcagaccagacatgagctacccggagcggctggcg
gcggagaggctgcacgccgagaggatggcggcagtggccaacgacccgatcgccaggctt
cagatgttcaacatcacgcctcatcaccaccagcactcccacatccactcacacctgcac
cttcatcagcaggactccctgcaccaaggcggtggtgaatgtcttgtgtgccctccaggt
tcaggggggcaccccctcgtagaccccctggcaggaggcccccacctcgcccgcttccct
tacccgcacggctcaatccccaactccctcctgggacagaacccacatgaacatgagatg
ctgcgacaccccgtcttcggtactccgtacccccgggaccttcctccccagatgtccgca
gcccaccagctccaggccatgcatgcccagtctgcagagctgcagcggctagctatggaa
cagcagtggctgcatggacatcaccacatgcacggtggcccacttcctggccaagaggac
tattacagccgcctgaagaaggaaagcgacaagcaactgtaa
DBGET
integrated database retrieval system
