Oncorhynchus tshawytscha (Chinook salmon): 112221695
Help
Entry
112221695 CDS
T05605
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112221695 (ighmbp2)
03012 Translation factors [BR:
otw03012
]
112221695 (ighmbp2)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112221695 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
112221695 (ighmbp2)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Other ribosome biogenesis factors
112221695 (ighmbp2)
Translation factors [BR:
otw03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112221695 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
UvrD-helicase
DEAD
nSTAND3
PIF1
AAA_22
ResIII
AAA_16
SLFN-g3_helicase
Helicase_RecD
AAA_25
AAA_18
IstB_IS21
T2SSE
ABC_tran
HEM4
AAA_31
AAA
PhoH
MeaB
NPHP3_N
DnaB_C
UvrD_C_2
ATPase
ATPase_2
Flavi_DEAD
NTPase_1
SRP54
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
112221695
NCBI-ProteinID:
XP_024239707
LinkDB
All DBs
Position
LG19:58194560..58221547
Genome browser
AA seq
1023 aa
AA seq
DB search
MEVECFVSKTLELLQEEREAEIEETKLWQENVSLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCKPSSQLCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPASDLISVLFGYSEPGSISQP
NDLSFLNSGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQVVKRGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDIDK
AFMGMKKMNDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLILKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLVAHSSVEKHLLKDLPGVASVE
ETSTPLLLIDTAGCGLSEMEVTDDQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVDLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLQDIVPQNYTRDHRDTKSNN
TKATASSSTSNKQKGRGQAGSKVEPGHKRTSGSNKTQGGEPQTGSDPGTHSQARRSTPTE
EEQRLTQIKYLEIKNQVEWFLQDPDQTELRFPSTLNSHDRLLVHQVAEELGLNHESQGEG
KDRSITVSRPPTGSNEAGEEEEQQAQEPAAVREEESVTGPPVGQPAAVLEEESVTGPPVG
QPAADLKTLHLERMRREQKKREQKIEQEKHLDTIRTAGQTQTAKKTKAKGKTKKTKAGAC
EIAAAATADADFDTLIDAVVKAERVCSFVKCKTLVIHLGQLCLFCNRQYCLGHHIPEVHG
CGDQARANARMRISKEGVLYAGSGHKDKSVDPNKKAYLHRKLDSKLKDMEKQRKTKPKES
DNN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagacaaaactatggcaggagaatgtctctctgaaagatctccagagtaaa
ggcgtttgtctcctgaagctgcagataggaagccagtcaactggcctttatggacgatca
ctcctccttctggaacccagaaaacacatgggcgtctctgtgctgcctagcaacaacttt
ggacccggagacatagtgggtctgtatgacctggatggctgtaagccgtcctcccagctg
tgtactggtgtcgtgacccgcatcagtcagtcagctgtcaccgtggcctgtgaggactcg
ccggacggactcaacctggacacagacgctctgtacaacctcatgaagctggctaacgat
gtcacgtacaaacgcatgaaaaaggccttgaacactctgaatgggtacagcagtggacca
gcctcggatttgatcagtgttctctttggctattcagaacctggctctatatcacaacca
aatgatctgtctttcctgaacagtggtctggatgagtctcagagacaggcggtgtcgttt
gctctgtctcagagagaggtagctgtaatacacgggccaccaggcaccggcaagacaacc
actgtggtggaaatcatcctacaagtggtcaaacggggacagaaggtcctgtgctgtgca
ggttctaacgtggccgtggataacctggttgagcgcctggctaaggccaaagctaaggtc
ctgagactgggccaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgccgacatacgcaaagacatcgacaaa
gcttttatggggatgaagaagatgaatgacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaagagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgtgctgatgttgttctagccactaacacaggtgctaatgatggtggccctctgaag
aacctacctgtagaccattttgactgggtggtgatcgatgagtgtgcccaggcgttggag
agctcctgctggatcgctctgctccgaggcaggaagtgtatcctggctggagattacaag
cagctgccacccaccatcaagtctcacacggctgcatctaaaggcctgtctgtcagcctg
atggagaggttgatcctgaagtatggcgactctgtagtcaggatgctgacagtgcagtac
cgtatgaacagtaacatcatgacctgggcctcagaacagatgtaccagggtcaactcgtc
gcacacagctcagtggagaaacacctgctcaaagatctcccaggagtagccagtgttgaa
gagaccagcacccctctcctcctcatagacacagcaggctgtggacttagtgagatggag
gtgacagacgaccagtccaaaggaaaccaaggtgaggtggacattgtggaactgcacatc
aaagcgttgactgaagctggggtgaaacctaaagacatcgctgttattgccccttacaat
ctgcaggtggatctcctgcgtcagcgtctctcagcgagacatcctgatctggaaatcaag
tctgtagacggcttccagggtagagagaaggaggctgtggtgctgaccttggtcagatct
aacaggaaaggtgagatagggttcttagctgaagaccggaggatcaacgtggcggtgact
cgagccagacgtcacctggccctggtgtgtgacacgcagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggcgacgtacgcaccgcctttgagtac
ctgcaggacattgtgccccagaactacaccagagaccaccgagataccaagtctaacaac
actaaagctaccgctagcagctccacctccaacaagcagaagggcagaggccaggctggg
agcaaggtggagccaggacacaagaggacctctgggagtaacaagacccagggaggagag
cctcagacaggttcggatcccggcacacacagccaagccagacgttccacccccacagag
gaggagcagagacttacgcagataaaatacctggagatcaagaaccaggtggagtggttt
ctccaggacccagaccagacggagctacggtttccctcgaccctcaactcccacgaccgc
ctgctcgtacaccaggttgcagaggagctgggcctgaaccatgagagccagggagaggga
aaggatagatccatcactgtctccagacccccaacagggtctaacgaggctggggaagaa
gaggagcaacaagcccaagaaccagcagccgtccgggaggaagagagtgttacagggcct
cctgtagggcaaccggcagccgtcctggaggaagagagcgttacagggcctcctgtaggg
caaccggcagcagatctcaagactttacatctggaacgaatgagacgggagcagaagaag
agggagcagaagattgagcaggagaagcatctagataccatccgtacagcaggacagact
cagactgctaagaagaccaaggcaaaaggaaagaccaaaaagaccaaagcgggggcctgt
gagatcgctgcggctgcgacagcggatgctgattttgacaccctaatagatgctgtggtg
aaggcagaacgcgtctgtagttttgtcaagtgtaaaacgttagtaattcatctgggacaa
ctctgtctgttctgcaacagacaatactgcctcggtcaccacatacctgaggtccatggg
tgtggagaccaagccagggccaatgccaggatgaggatcagtaaagaaggggttctgtat
gctggtagtggacacaaggacaagtctgtagatcctaacaagaaggcctatttacacagg
aagctggactccaaactcaaagacatggaaaagcaacggaagaccaaacccaaagagagt
gacaataattga
DBGET
integrated database retrieval system
