KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112221731
Entry
112221731         CDS       T05605                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1 isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112221731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112221731
   03041 Spliceosome [BR:otw03041]
    112221731
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112221731
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112221731
Spliceosome [BR:otw03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112221731
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 112221731
NCBI-ProteinID: XP_024239765
LinkDB
Position
LG22:9949100..9954101
AA seq 406 aa
MSKEAPREPEQLRKLFIGGLSFETTDESLREHFEQWGSLTDCVVMRDPANKRSRGFGFVT
YSGVNEVDAAMEARPHKVDGRLVEPKRAVSREDSSRPGAHVTVKKIFVGGIKEDTEDSHL
RDYFEQFGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKAL
SRQEMQTTGVGMRGGRGGGGNYGRGGGYGGNDFDRDGGYFDGRGDADSSVSGGRGGGYGG
GDGGYNNGYGGGDGGYGGGPGGYGGGNRGYGGGQGYGGGQGGGYGGGNGYNDYNNGNGGN
FGGGKSMASPQEAAPVGGNFGGGGGGGGNNYNDFGNYNNQASNYGPMKGNNFGGGGGGGS
GGGSSGGSGGGGGRSSGPYGGGYGGNSGGGGGGGGGYGGGSGGRRF
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgtcgaaggaggccccacgtgaacccgagcagctccgcaaactgttcatcggaggtctg
agcttcgaaaccacggatgagagtttgcgagaacacttcgaacaatgggggtctcttaca
gattgtgtggtcatgagagatccagccaacaaacgctctagaggttttgggtttgtcacc
tactctggtgtgaacgaggtcgatgctgccatggaagcacgcccccataaggttgatggt
aggctggtagagcccaagagggctgtttccagagaggactctagccgtccaggcgctcat
gtcacagtgaaaaagatatttgttggaggtatcaaggaagacactgaagactcccaccta
cgagactactttgagcaatttggcaagattgaagtaatagacattatgaccgaccgcacc
agtggcaagaagaggggcttcgcctttgtcacgtttgatgaccatgatgcagtggacagg
attgtcatccagaaataccacactttgaacggtcacaattgcgaagtgaggaaagcgttg
tccagacaggagatgcagacaacaggagtgggtatgaggggtggccgcggaggtggtggc
aactatggcagaggtggaggatatggaggtaatgactttgaccgtgatggtggatacttc
gatggccgtggtgacgctgactcgtctgtttcaggaggcagagggggtggatacggagga
ggagatggcggttacaacaatggttatgggggaggtgacggtggttatggtggtggccct
ggtggttatggcggcggtaaccgcggctacggtggagggcaaggttatggtggtggacag
ggtggcggctacggtggtggaaatggctataacgactacaacaatggcaatggtggaaac
tttggcggcggtaagtccatggcttccccacaagaagcagccccagttggtgggaacttt
ggcggcggtggtggtggcggcggcaacaactacaatgactttggcaactacaacaaccag
gcttccaactacggcccaatgaagggtaacaactttggaggtggaggtggtgggggtagc
ggtggtggcagcagtggtggaagcggcggtggaggcggcaggagtagcggcccatatgga
ggtggatatggaggtaactctggaggtggtggtggtggcggcggtggatatggcgggggt
tccggtggacgacgattctaa

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