Oncorhynchus tshawytscha (Chinook salmon): 112221808
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Entry
112221808 CDS
T05605
Name
(RefSeq) ATP-dependent RNA helicase DDX19A isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112221808
03015 mRNA surveillance pathway
112221808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112221808
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112221808
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112221808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112221808
NCBI-ProteinID:
XP_024239927
UniProt:
A0A8C8DA94
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All DBs
Position
LG22:complement(12037834..12042803)
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AA seq
493 aa
AA seq
DB search
MATDSWALAVDKQEATTDSFGSLVIRSLPRGGGDAAPNKAKKGTTKQVENGTNVEGEEKE
DKAAQSLLNKMIHTSLVNTTNQVEVLQRDPNSPLYSVKTFEELRLKDKLLKGVYDMGFNR
PSKIQENALPMMLAEPVYYPSGSRPQNLIAQSQSGTGKTAAFVLAMLSHVDPTNKWAQCL
CIAPTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRGAKLQEQIVIGTPGTVLDWCS
KLKIINPKKISVFVLDEADVMIATQGHQDQSIRIQRMLPKECQMLLFSATFEDSVWKFAE
RVVPDPNIIKLKREEETLDTIKQYYVLCSDKEEKFTALCNIYGAITIAQAMIFCHTRRTA
GWLAAELTKEGHVVALLSGEMTVEQRATIIERFREGKEKVLVTTNVCSRGIDVEQVSVVI
NFDLPMDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKHSMNILNQIEEHFNKKINKL
DTDDLDEIEKISN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcttgggcccttgctgtcgataaacaggaagctacgactgactcattc
ggctccttggtgataagatctctacctcgaggtggaggtgatgctgcacctaataaggca
aaaaagggtaccacaaagcaagtggagaatggcaccaacgtcgaaggggaggaaaaagag
gacaaagcggcccagtcattgttgaataagatgatccacaccagccttgtgaacactacc
aatcaagtagaggttcttcagagggatcccaactctcctctttactcggtcaagacattt
gaagagctgaggctgaaagataagctgctgaagggagtgtatgacatgggcttcaacaga
ccctctaagatccaggagaatgccctgcccatgatgctggcagagcccgtgtattatccc
tctggttccagacctcagaacctgattgcccaatcacagtccggtacaggtaaaacagct
gccttcgtgctggccatgctcagccatgtcgacccaactaacaaatgggcacagtgtctt
tgcattgccccaacgtacgagctagctttgcagactggtaaagtcattgagcagatggga
aaattctatcctgaggtcaaattggcatatgccattcgtggcaataaattggaccgaggg
gcgaagcttcaggagcagattgtcatcgggacacctggcacggtcttggactggtgctcc
aaactgaagatcatcaaccccaagaagatcagcgtctttgtcctggacgaggctgatgtc
atgatcgccacacagggtcaccaggaccagagcatccggatccaaagaatgttgccaaag
gaatgtcagatgctgctgttctctgccacctttgaggactccgtgtggaagtttgctgag
agggttgtgccagaccccaacatcatcaagctgaaacgtgaagaggagactctggacacc
atcaagcagtattacgtgctttgcagcgacaaggaggaaaagtttacagcactctgtaat
atctacggcgccatcaccatcgcccaagctatgatcttctgtcacacccgaaggacagct
ggctggctggctgcagagctgaccaaggagggccatgtggtggcgctgctgagtggggag
atgactgtggaacagagagcgaccatcatcgaacgcttcagggagggcaaggagaaagtc
ctggtgaccaccaacgtatgctccagaggcattgatgttgagcaagtttctgtggtgata
aattttgacctgcccatggacaaagatggaaacgctgacaacgagacataccttcaccgg
attggtcgcacaggacgtttcggcaagaggggccttgcagtcaatatgattgacagcaaa
cacagcatgaacattctcaaccaaatcgaggaacatttcaataagaagatcaacaagctt
gataccgatgatctcgatgaaatcgagaaaatcagcaactag
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