Oncorhynchus tshawytscha (Chinook salmon): 112221845
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Entry
112221845 CDS
T05605
Symbol
deaf1
Name
(RefSeq) deformed epidermal autoregulatory factor 1 homolog isoform X1
KO
K23041
deformed epidermal autoregulatory factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112221845 (deaf1)
03019 Messenger RNA biogenesis [BR:
otw03019
]
112221845 (deaf1)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
SAND domain-containing proteins
112221845 (deaf1)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112221845 (deaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAND
zf-MYND
AOC_like
Motif
Other DBs
NCBI-GeneID:
112221845
NCBI-ProteinID:
XP_024240036
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All DBs
Position
LG01:14143518..14226100
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AA seq
550 aa
AA seq
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MDETDSATKGLVLDEESIDAAGEPVEEGVDSDTESEAEVTTMTVMGEPGNIEIGTESLPN
SDDAETAFAEVTTVTVGDVQAAEDNVFTATSASIPEHVLTGRTTLQIGDGLNPQKATLIV
VHTEGIVDATGLKNAAAAMSSAPQTPPTPMNPGQEKDGSKYNWDPSVYNNELPVRCRNTS
GMLYKNRLGSGGKGRCIKHSNHWYTPTEFEGMSGRASSKDWKRSIRYAGRPLQCLIQERI
LNPHAASCTCAACCDDLSLCTKDSPSYAGENINMTGPVRLFVPYKRRKKENEQPTTPEKK
DLPLPPPKNITLAPGATFTVSPSGQITTSGTLTFDRTSPGDATALLSEGTAHGEVFTSTE
GTYMLTALPALAMAPQAKVESPSSSPGLVNGGLEVSGVRESQRTWLYLEETANSLLSTVQ
QLKALIDQAKQACHCQAGHDAFSQDKIHGSRKECTLTQPFQSQISFQHPDDPEGKRGSEI
TEIIIKQMCVNCGREAMSQCTGCHKVNYCSTFCQRKDWKEHQHNCCQTSGAVAVQEEVPM
STIDMDKVKV
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggacgagacggactcggcaacgaagggactagtgttggacgaggagtccatagacgct
gcgggagagccggtggaggagggggtggattcggatactgagtcggaggccgaagtcacc
acgatgacagtaatgggagaaccggggaacatcgagattgggaccgagtccttgccgaac
tctgacgatgccgagacagcttttgcagaagtcacaacagtcactgtgggggatgtccaa
gcagccgaggacaatgtgttcactgccacctcagcctccataccagagcatgttcttact
ggcaggaccaccctacagattggcgatggtctcaatccccagaaggccactctgatagtg
gttcacactgaaggaatagtggacgcaacaggactgaagaacgctgcagccgccatgtcc
tctgccccccagactccccccaccccaatgaatccagggcaggagaaagatggctccaag
tacaactgggatccatctgtgtacaacaacgagctgccagtgcgctgcaggaacaccagc
ggcatgttgtacaagaacagactgggctcaggtggaaagggacgctgcatcaagcacagc
aaccactggtacacgcccactgagtttgagggcatgtctggccgggcgagcagcaaggac
tggaagagaagcatccgctatgcaggccgtcccctgcagtgcctaatccaggagcgcatc
ctcaacccacatgccgcgtcctgtacttgtgcagcctgctgtgacgacctctcgttgtgt
accaaggatagtccatcttacgcaggggagaacattaatatgactggcccggtcagactc
tttgttccttacaagagacgcaagaaggagaacgagcagccgaccactccagagaagaag
gacctccccctcccaccgcccaagaacatcacactggcaccgggggcaacattcacagtg
tctccgtcaggccagatcaccacgtcagggaccctgaccttcgaccggacgtctcccggg
gacgccacagcccttctctctgagggcacggcacatggcgaggtcttcaccagcacagaa
ggtacctacatgttgacagcgctaccggcactggccatggccccccaggccaaggtggag
tctccatcctcatccccggggctggtgaatggggggctggaggtgtctggggtcagggag
agccagaggacatggctttacctggaggagacggccaacagcctgctgagcacggtgcag
cagctcaaggcactgatcgaccaggccaagcaggcctgccactgccaggcaggccatgat
gccttcagccaggacaagattcacggcagcaggaaggagtgtacactcacccagcccttc
cagagtcagatatcattccagcacccagacgacccagaggggaagagaggctcagaaatt
acagagatcataatcaagcaaatgtgcgtgaactgtggacgggaggccatgagccaatgc
acgggatgccacaaggtcaactactgttccaccttctgtcagagaaaggactggaaggag
caccagcacaactgctgccagaccagtggggctgtggctgtccaggaggaggtgcccatg
tcaaccatagacatggacaaagtcaaggtctag
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