KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112221870
Entry
112221870         CDS       T05605                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:otw01009]
    112221870 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112221870 (kdm5bb)
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     112221870 (kdm5bb)
Protein phosphatases and associated proteins [BR:otw01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112221870 (kdm5bb)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112221870 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_2
Other DBs
NCBI-GeneID: 112221870
NCBI-ProteinID: XP_024240033
UniProt: A0A8C8GVD1
LinkDB
Position
LG22:14475713..14510084
AA seq 1543 aa
MTQPRPDEFKPPQECPVFEPSWEEFADPFAYINKIRPIAEKTGICKVRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCSLKIPHVERKILDLYQLNKNV
ADEGGFDIVCRDRRWTAIALKMGFAPGKAVGSHLRSHYERLLYPYNLFQSGANLLAPELA
SKLMRLVSAPELDTFVQEPTLPVDTSDKECKPPDLTERQHFVEPTKSCCNSAHRAKRMRA
EVDALVAQSHTHLSEELLLKPSGCVKTEPGTEPCENNRPNLRRRMGSFVAKPEPDIPILV
KQEPIEPVSEADKNKSRYKKKTSIDAPPPAVSVVDLYMCLVCGSGSDEDRLLLCDGCDAS
YHTFCLIPPLHDIPKGDWRCPKCLAQECSKPQEAFGFEQAYRDYSLRAFGEMADSFKSDY
FNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPIKNGRFKVSEKDEK
YLKCGWNLNNMAMMDPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHW
GEPKTWYGAPGFAAEQLEAVMKKLAPELFQIQPDLLHQLVTIMNPNTLMSYGVPIYRTNQ
CAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWMALGRQCVDHYRLLHRYCVFSHDEMI
CQMASKANSLDVVLASAVQKDMKDMVREEQDLRDKVRKMGVLRCEQAEYDLLQDDERQCA
KCRTTCFLSAITCPCSPGQLVCLHHIQDLCSCPLTNYTLNYRFTLDDLYPMMNVVKQRAE
TYDEWASRVTETLEAKLDKKKSLSVFRSLINESESKMFPDNDLLRQLRLVTQDAEKCFSV
AQQLLNGKRQTRYRCGGGKTQSQLTVQELRSFVRQLYNIPCSLPQAPKLKDLLNCIEDFQ
QHSEKVLMDEATSTAVIQSLLDVSFDFDVELPELPILRERLEQARWLEGVQQTSAQPATL
TLETMRRLIDQGVGLTPHPSVEKGMAHLQELLTVSEHWEEKTSILLKARPPPSIEVLSEA
AEKVVGIPAYLPNCLMLKDSISRAREWLQEAEAFQDGESIPLFDKLSDMVLRGQAIPVQL
DPLKHLEFLVTELQAWKESAAKTFLMKNSHFTLLEVLCPRFEVRAGSPKRKSKKAKDCSK
KKMVKLDCLSDVEKALLETKDTTSALATLGEVRLREMWALSSLRAANESKLLPTADCMDL
KVCVCQNPPMGAMLQCELCRDAFHSVCVRAPSDSRSTQAWLCPDCRRSEKPSLDKVLPLL
ASLQRIQVRLPEGDALHYLVERTVSWQQRARQVSASCGLPDLEESFRTSPSPVGKPPCLT
PEWNRTSHDQMVFYTEQRCIPLQGLSVELEELMVEGLLLQVSLPEITQLYHVLLNGLGTH
HTHGRTSQQEDDPSDCDKRKQCNSQGRSSPQKEGGLKKEVVNGAEKKAKRRLEREALETE
RRDKAKKLQNKRQKMNKEKNLERRAASTSSSPRSDFSHSDDSEEEMAMCPAEGCQQPEGD
EVDWVQCDGSCNQWFHQVCVGVTAELAEKEDYVCVGCTISDGR
NT seq 4632 nt   +upstreamnt  +downstreamnt
atgacccagcctcggccggacgagttcaagccgcctcaggagtgcccagtcttcgaacca
agctgggaggaatttgccgatccttttgcttatataaataagattcgtccaattgcggaa
aaaactggtatttgtaaggtccgcccgcctccggactggcagcctccatttgcatgtgat
gttgacagactgcacttcactccccggatacagaggctaaatgaactggaggcacagacc
agagttaagcttaacttcttggaccagattgcaaagttctgggagttgcaggggtgttct
ctgaagattcctcatgtggaaaggaagatattggacctgtatcaactcaacaagaatgtt
gcagatgagggcggatttgatattgtgtgtcgcgatagacgttggacggcgattgcgctt
aagatgggctttgctcctggcaaggctgttggctctcacttacggtcacactatgagaga
cttctctacccctacaacctcttccagagcggagccaacctcctggcaccagagcttgcg
tccaagctgatgcgcttagtgtctgctcctgaacttgacacgtttgtccaggagccaacc
ctgccagttgacacgagtgacaaggagtgtaaaccccctgacctgaccgagaggcagcac
tttgttgagccaaccaagtcctgctgcaacagcgcccacagagcaaagcgaatgagagct
gaggtggatgcccttgtcgcacagagccacacacacttgtcagaagaactcctcttaaaa
ccatcgggttgtgtgaagacagaaccaggaactgaaccctgtgaaaacaacagaccaaat
ctgaggaggaggatgggctcttttgttgccaagcccgagccagacattcccattctagtg
aaacaagaacccatcgagccggtgagcgaggcagacaaaaacaagtctcgatataagaaa
aaaacaagtattgatgccccacctcctgcagtgagtgtagtggacctgtatatgtgtctg
gtgtgtggcagcgggagtgacgaggatcgtcttctgttgtgtgatggctgtgacgccagt
taccacaccttctgtctcataccccctctgcacgacatccccaaaggagactggaggtgc
cccaagtgcctggctcaagagtgcagcaaacctcaggaggcatttggctttgagcaggca
tacagggactactctttgcgggcttttggagaaatggcagactccttcaaatctgattac
ttcaacatgcccgttcatatggttcccacagagttggtggaaaaagagttctggcgcttg
gtgagcaccatcgaagaggacgtcacagtggagtacggagcagatatagcctccaaggag
tttgggagcggattccccatcaagaatggaagatttaaggtttcagaaaaggatgagaag
tacctgaagtgtggctggaacctgaacaacatggcgatgatggacccgtcagtgttgact
catgtcacagcagacatctgtgggatgactctaccttggctctatgtaggcatgtgcttc
tcctccttctgctggcacatcgaggaccactggagctactccatcaactacctgcactgg
ggggagccaaagacatggtatggagcacctggctttgctgcggaacagctggaggctgtg
atgaagaaactagctccagagctgtttcagattcagccagatctcctccaccagctggtc
accatcatgaaccctaacaccctcatgtcctacggggttccgatttacagaaccaatcag
tgtgctggtgagtttgtcatcactttccccagagcctatcacagtggttttaaccaaggt
tttaacttcgctgaggctgtcaacttctgtactgtggactggatggcattaggccgccaa
tgcgttgaccactacagactgctgcatcggtactgtgttttctcccacgacgagatgatc
tgccagatggcctccaaggccaacagtctggacgtggtcctggcgtcggctgtccagaag
gatatgaaggatatggtcagagaggaacaggacctacgagataaagtccgcaagatgggg
gtgttgcgttgtgagcaggcggagtacgatctcctgcaggatgatgagcggcagtgtgcc
aaatgtaggaccacctgtttcctgtctgccatcacctgcccctgcagccccggccagctg
gtctgtctccaccacatccaggacctctgctcctgccccctcaccaactacacactgaat
tatagatttacactggatgatctgtaccccatgatgaacgtggtgaagcagcgagctgag
acctacgacgagtgggcatcccgcgtgacggagactctggaggctaagttggacaagaaa
aaaagcttgtcagtcttccgctccctcattaacgaatcagagtccaagatgttccctgac
aatgacctcttgcgtcagctccgtttagtcacacaggatgcagagaagtgcttctcagtg
gcccagcagctactcaacggcaaaaggcagactaggtatcggtgtggtggggggaagacc
cagagccagctgaccgtgcaggagctgaggtcatttgtcaggcagctttacaacatccct
tgcagccttcctcaagcccccaaattaaaggatctattgaattgcatcgaagacttccag
cagcacagtgagaaagttctgatggatgaggccaccagcacagcggtgatccagagtctt
ctagacgttagctttgactttgatgtggagctgcctgaacttccaatactacgggagagg
ctggagcaagcccgttggctggagggtgtgcagcagaccagcgcccagcccgccaccctc
accctggagaccatgcggaggctgatagaccagggtgtgggcctgacccctcacccctcc
gtggagaagggcatggctcatctgcaggagctactcacggtgtcagaacattgggaggaa
aagaccagcatcctcctcaaggccaggccccccccatctatagaagtcctctctgaagca
gcggagaaggtggtgggtatacctgcttacctccccaattgtctgatgctgaaggactcc
atcagtagggccagggagtggcttcaggaagcagaggcatttcaggatggagagtccatt
ccattgtttgacaagctctctgatatggttctacgaggacaagccatcccagtccagctg
gaccctctaaagcatctggagtttctggtaacagagctgcaggcctggaaagagtctgca
gctaaaaccttcctcatgaaaaactctcacttcactctgcttgaggttctgtgtccaaga
tttgaggttagagcagggtctccgaaaaggaagtcaaaaaaagctaaagactgcagtaag
aagaagatggtgaagctagactgtctcagtgatgtggaaaaagccctcttagagaccaag
gacactacctcagctctggcaactctcggggaagtgcggttaagggagatgtgggccctc
tcctccctccgggcagctaacgagtccaagctcctccccacggcagactgcatggacctg
aaggtgtgtgtgtgtcagaatccccccatgggagccatgttacagtgtgagctctgtcgg
gatgccttccacagcgtgtgtgtgagggctccctcagactcccgttcaacccaggcctgg
ctgtgtccagactgccgacgctcggagaagccctctctggacaaggtcctgcccttgctg
gcgtcgctgcagcgtatccaggtgcgtctaccggaaggcgatgcgcttcactatttggtt
gagagaacagtcagctggcaacagcgagcacgacaggtctctgcctcctgtggccttcca
gacctggaggagagctttagaacttcaccatctccggttggaaagccaccatgtttgact
ccagagtggaacaggacaagtcatgatcagatggtcttctacaccgagcaacgatgcatt
cctctgcagggtctgagtgtggagctggaggagctgatggtggaagggctcctgctgcag
gtgtctctgccagagatcacacagctctaccacgtgttactgaacgggctgggaacgcat
cacacccacggacgcacgtcacagcaagaggacgacccctcggactgtgacaaacgcaag
cagtgcaactctcagggaagaagctctccacaaaaagagggtggcctgaaaaaggaagta
gttaacggagcagagaagaaggccaagcgacgcctggagagggaggctctggagacagag
cgcagggacaaggccaagaagctccaaaacaagagacagaaaatgaacaaggagaagaac
ctggaacgcagggcagcctcgacctcctcatctcctcgttccgacttctcccattcagac
gactctgaagaggagatggccatgtgtccagcagagggatgccagcagccagaaggagat
gaggtggactgggtccagtgtgacggcagctgtaaccagtggttccaccaggtctgtgtg
ggtgtgacagccgagttggctgagaaagaggactatgtgtgtgtcggctgtacaataagc
gatggccgctga

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