Oncorhynchus tshawytscha (Chinook salmon): 112221921
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Entry
112221921 CDS
T05605
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00260
Glycine, serine and threonine metabolism
otw00630
Glyoxylate and dicarboxylate metabolism
otw00670
One carbon pool by folate
otw01100
Metabolic pathways
otw01200
Carbon metabolism
otw01230
Biosynthesis of amino acids
otw01240
Biosynthesis of cofactors
otw04981
Folate transport and metabolism
Module
otw_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
112221921 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
112221921 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
112221921 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
112221921 (shmt2)
Enzymes [BR:
otw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
112221921 (shmt2)
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Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
112221921
NCBI-ProteinID:
XP_042186087
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Position
LG02:10742661..10784260
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AA seq
521 aa
AA seq
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MCFLVRDQLSLSPSQSPTLTLHHRGQRCQPLCLRAPVALSSVGARRSQHAATRSVEQEAP
WTGQDSLAQDDPEMWNLLRKEKDRQCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPG
RRYYGGAEVVDQIELLCQKRALEAFDLDPALWGVNVQPYSGSPANFAAYTAVLNPHDRIM
GLDLPDGGHLTHGYMSDTKRISATSIYFESMPYKLNPATGLIDYDQLEMTARLFRPKLII
AGTSAYARLIDYARIKKLCTEVKAYLLADMAHISGLVAAKAVPSPFKYADMVTSTTHKSL
RGARAGLIFYRKGVRSVDKKGKEIQYDLEDRVNFSVFPSLQGGPHNHAIAGVAVALKQAQ
TPMFREYIGQVMRNSKAMAEALLSKGYTLVSGGTENHLVLVDLRPKGIDGARAERVLELV
SITANKNTCPGDKSALAPGGLRLGAPALTSRQFKETDFVQVVEFMDEGFKIALDVKKKTG
KLAAFNNFLLEDPETVSRMAELKKRVEAFARPFPMPGFEDH
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtgttttttagtaagagatcaactttcactatctccctcccagagtcccactctcact
ctgcaccaccggggacaaagatgccagccattgtgcctgcgtgccccggtggccctgagc
agcgttggggcgaggaggagccagcatgcggctacccgtagtgtggaacaggaggccccg
tggactgggcaggacagtctggcccaggacgacccggagatgtggaacttgctgcggaaa
gagaaggacaggcagtgtcgaggactggagctcattgcctctgagaacttctgcagtcgg
gctgcgctggaggcccaaggatcctgcctcaataacaagtactcagagggctacccaggc
aggaggtactacggtggagctgaggtggtagaccagatagagttgttgtgccagaagaga
gccctggaggcctttgacctggaccctgccctgtggggggtgaatgtccagccctactct
ggctctcccgccaacttcgctgcctacaccgctgtcctcaaccctcacgaccgcatcatg
ggcctggacctgcctgacggtggacatctgacccatggttacatgtctgacaccaagagg
atatctgctacctccatctattttgagtccatgccctacaagctcaatcctgccacaggg
ctcattgactatgaccagctggagatgactgcccgtctcttccggcccaagttgatcatt
gcaggcaccagcgcctacgctcgcctcattgactacgctcgcatcaagaagttgtgtacg
gaggtgaaagcctacctgctggctgacatggcccacatcagtggtctggtggctgcgaag
gctgtcccctcgccattcaagtatgctgacatggtcacctccacaacacacaagtccctc
cgaggagccagggctggtctgatcttctaccgtaagggcgtgcgttctgtggacaagaag
gggaaggagatccaatatgacctggaggaccgggtcaacttctctgtgttcccctctctt
caggggggaccccacaaccacgccatcgctggggtggctgtcgctctcaaacaggcccag
acgccgatgttcagagagtacattggccaggtgatgcgtaactccaaggccatggctgag
gccctactgagcaaaggatacaccctggtgtcaggggggacggagaaccatctggtgctg
gtggacctgaggcctaagggcattgatggagccagagcagagagagttctggagctggtg
tccatcacagccaacaagaacacctgtcccggggacaagagtgccctggcgcctgggggc
ctccggctaggtgccccggcgctgacctccagacagttcaaggagacggactttgtccag
gtggtggagttcatggacgaaggctttaagatcgccctggacgtcaagaagaagactggg
aaacttgcagcctttaacaacttcttgttggaggatccagagacggtgtctcgcatggca
gagctgaagaaacgagtggaggccttcgcacgtcccttccccatgcctggcttcgaggat
cactag
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