Oncorhynchus tshawytscha (Chinook salmon): 112221990
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Entry
112221990 CDS
T05605
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
112221990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112221990
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112221990
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112221990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
zf-C3HC4_2
zf-UBR
zf-RING_10
U-box
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
112221990
NCBI-ProteinID:
XP_024240262
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Position
LG22:18543264..18545951
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AA seq
541 aa
AA seq
DB search
MPLSKPEKLLEHELSCPICLQLYTDPVYLPCGHNYCLACIQKATDVSGGEKSLPQCPECR
EEYGGTETLQRNFKLCGIIEGYKAVAPADHLKREPLKVRCDHCLDLETLAIKTCLKCEVS
LCARHLQHHTERESFRTHDLVEPQTELGQRGCAIHGRLLEYFCASDMTSLCANCFIEGTH
QNHDVLTFEAAEEEMRRALEIQSKAVANRLQLTETLLQRAAEDQGTSEAVGDKLLSKSVD
LMDSMAGLVSRYKDRMSLLLEKERGHQRESWQSGLGLLEEQKQQLMEAHQRTTEALTETE
KCLFINRFLLIEPQLREVMTGTVARVPNKVPLNPKRLQASLRMEDFRAEMARLLQSLHVL
LNPLELTFNLSTAHTSLLLSNDLQTVKYSGTKQAYADNPERFSTAPQVLCSQGFTSGEHI
WVVEVGDQSMWSVGLCYKSMPRRGDHSRLGHNPASWRLQWKNKKLTACHASSNVALAEMA
NQPLRVEVALDYEGGTLIFHSTKDRREHLHTFRAVFREAVYPAFSILSTREQSWITLQSG
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgtctaaaccagagaagctgttagaacatgagctcagctgccctatctgcctg
cagctctacacggatcccgtgtatctgccctgtggccataactactgcctggcctgcatt
cagaaggctacagatgtcagcggtggagagaagagcctgcctcaatgccctgagtgcaga
gaagagtacggcggtacagagacactgcaaaggaacttcaagctctgcggcatcatagaa
ggctacaaggccgttgcgccagcagaccacctgaagagagagccgctgaaggtgcgctgt
gaccactgcctggacttagagacactggccatcaagacctgcctaaagtgtgaggtgtcc
ctgtgtgccaggcacctgcagcaccacactgagagggagtccttcaggacccatgacttg
gtggagccccagactgagctgggccagagaggttgtgccatccacggacgcctgctggag
tacttctgcgccagcgacatgacctctctctgtgccaactgcttcattgagggcacccac
cagaatcatgatgtcctgacatttgaggcagccgaggaggaaatgaggcgggccctggag
attcagagcaaggcggtggccaacaggctgcagctgaccgagaccctgctacagagggct
gctgaggaccagggcacctctgaggctgtgggagacaagctgctgtccaagtctgtggat
ttgatggacagcatggccggcctggtgagcaggtacaaggacaggatgagcctgctgctg
gaaaaggagagaggccatcagagggagagctggcagagtggcctggggcttctagaagaa
cagaagcagcagctgatggaggcccaccagcgcaccactgaggccctcacagagacagag
aagtgtctgttcatcaacaggttcctgctaattgagccccagctcagggaggtcatgacg
ggtaccgtggccagagtgcccaacaaggtccctctgaaccccaagcggctccaggccagc
ctgaggatggaggacttcagggcagagatggcccggctcctccagtctctccacgtcctg
ctaaaccctctggagctgacctttaacctcagcacagcccacaccagcctgctgctctcc
aacgacctgcagacagtcaaatacagcggtaccaagcaggcctacgctgataacccagag
aggttcagtaccgcaccccaggtcctgtgctcccagggcttcaccagtggggagcacatc
tgggtggtggaggtgggcgaccagagcatgtggtcagtgggcttgtgctacaagagcatg
cccaggaggggtgaccacagccggctggggcataacccggcctcctggcgtttgcagtgg
aagaacaagaagctgacggcgtgccatgcctcctcaaacgtggcgctggcggagatggcc
aatcagccactgagggtggaggtggctctggactatgaggggggaacactgatcttccac
agcaccaaggaccgtcgggaacatctgcacacgttcagggctgtgttcagagaggctgtg
taccctgcgttcagcatcctctccaccagagaacagtcctggatcacgctacagagtgga
gtgtaa
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